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11
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Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation.(Report)

Gamazon, Eric R. ; Segre, Ayellet V. ; van de Bunt, Martijn ; Wen, Xiaoquan ; Xi, Hualin S. ; Hormozdiari, Farhad ; Ongen, Halit

Nature Genetics, 2018, Vol.50(7), p.956(2) [Peer Reviewed Journal]

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12
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Improved identification and analysis of small open reading frame encoded polypeptides.(Report)

Jiao Ma ; Diedrich, Jolene K. ; Jungreis, Irwin ; Donaldson, Cynthia ; Vaughan, Joan ; Kellis, Manolis ; Yates, John R. III ; Saghatelian, Alan

Analytical Chemistry, April 5, 2016, Vol.88(7), p.3967(9) [Peer Reviewed Journal]

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13
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An Epigenetic Signature for Monoallelic Olfactory Receptor Expression.(Report)

Magklara, Angeliki ; Yen, Angela ; Colquitt, Bradley m ; Clowney, E. josephine ; Allen, William ; Markenscoff-Papadimitriou, Eirene ; Evans, Zoe a ; Kheradpour, Pouya ; Mountoufaris, George ; Carey, Catriona ; Barnea, Gilad ; Kellis, Manolis ; Lomvardas, Stavros;

Cell, May 13, 2011, Vol.145(4), p.555(16) [Peer Reviewed Journal]

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14
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Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells.(Report)

Ram, Oren ; Goren, Alon ; Amit, Ido ; Shoresh, Noam ; Yosef, Nir ; Ernst, Jason ; Kellis, Manolis ; Gymrek, Melissa ; Issner, Robbyn ; Coyne, Michael ; Durham, Timothy ; Zhang, Xiaolan ; Donaghey, Julie ; Epstein, Charles b ; Regev, Aviv ; Bernstein, Bradley e;

Cell, Dec 23, 2011, Vol.147(7), p.1628(12) [Peer Reviewed Journal]

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15
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The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.(EVOLUTION)(Report)

Presser, Aviva ; Elowitz, Michael B. ; Kellis, Manolis ; Kishony, Roy

Proceedings of the National Academy of Sciences of the United States, Jan 22, 2008, Vol.105(3), p.950(5) [Peer Reviewed Journal]

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16
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Distinguishing protein-coding and noncoding genes in the human genome.(GENETICS)(Author abstract)

Clamp, Michele ; Fry, Ben ; Kamal, Mike ; Xie, Xiaohui ; Cuff, James ; Lin, Michael F. ; Kellis, Manolis ; Lindblad - Toh, Kerstin ; Lander, Eric S.

Proceedings of the National Academy of Sciences of the United States, Dec 4, 2007, Vol.104(49), p.19428(6) [Peer Reviewed Journal]

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17
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Wisdom of crowds for robust gene network inference.(ANALYSIS)(Report)

Marbach, Daniel ; Costello, James C. ; Kuffner, Robert ; Vega, Nicole M. ; Prill, Robert J. ; Camacho, Diogo M. ; Allison, Kyle R. ; Kellis, Manolis ; Collins, James J. ; Stolovitzky, Gustavo

Nature Methods, 2012, Vol.9(8), p.796(11) [Peer Reviewed Journal]

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18
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RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

Zeitlinger, Julia ; Stark, Alexander ; Kellis, Manolis ; Hong, Joung-Woo ; Nechaev, Sergei ; Adelman, Karen ; Levine, Michael ; Young, Richard

Nature Genetics, Dec 2007, pp.1512-6 [Peer Reviewed Journal]

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19
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The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse.(Report)

Grote, Phillip ; Wittler, Lars ; Hendrix, David ; Koch, Frederic ; Währisch, Sandra ; Beisaw, Arica ; Macura, Karol ; Bläss, Gaby ; Kellis, Manolis ; Werber, Martin ; Herrmann, Bernhard g;

Developmental Cell, Jan 28, 2013, Vol.24(2), p.206(9) [Peer Reviewed Journal]

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20
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A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

Rasmussen, Matthew D ; Kellis, Manolis

Molecular Biology and Evolution, 2011, Vol.28(1), p.273-290 [Peer Reviewed Journal]

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