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Topologically associating domains are stable units of replication-timing regulation.(Report)

Pope, Benjamin D. ; Ryba, Tyrone ; Dileep, Vishnu ; Yue, Feng ; Wu, Weisheng ; Denas, Olgert ; Vera, Daniel L. ; Wang, Yanli ; Hansen, R. Scott ; Canfield, Theresa K. ; Thurman, Robert E. ; Cheng, Yong ; Gulsoy, Gunhan ; Dennis, Jonathan H. ; Snyder, Michael P. ; Stamatoyannopoulos, John A. ; Taylor, James ; Hardison, Ross C. ; Kahveci, Tamer ; Ren, Bing ; Gilbert, David M.

Nature, Nov 20, 2014, Vol.515(7527), p.402(4) [Peer Reviewed Journal]

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Integrative analysis of 111 reference human epigenomes.(RESEARCH: ARTICLE)(Report)

Kundaje, Anshul ; Meuleman, Wouter ; Ernst, Jason ; Bilenky, Misha ; Yen, Angela ; Kheradpour, Pouya ; Zhang, Zhizhuo ; Heravi-Moussavi, Alireza ; Liu, Yaping ; Amin, Viren ; Ziller, Michael J ; Whitaker, John W ; Schultz, Matthew D ; Sandstrom, Richard S ; Eaton, Matthew L ; Wu, Yi-Chieh ; Wang, Jianrong ; Ward, Lucas D ; Sarkar, Abhishek ; Quon, Gerald ; Pfenning, Andreas ; Wang, Xinchen ; Claussnitzer, Melina ; Coarfa, Cristian ; Harris, R Alan ; Shoresh, Noam ; Epstein, Charles B ; Gjoneska, Elizabeta ; Leung, Danny ; Xie, Wei ; Hawkins, R David ; Lister, Ryan ; Hong, Chibo ; Gascard, Philippe ; Mungall, Andrew J ; Moore, Richard ; Chuah, Eric ; Tam, Angela ; Canfield, Theresa K ; Hansen, R Scott ; Kaul, Rajinder ; Sabo, Peter J ; Bansal, Mukul S ; Carles, Annaick ; Dixon, Jesse R ; Farh, Kai-How ; Feizi, Soheil ; Karlic, Rosa ; Kim, Ah-Ram ; Kulkarni, Ashwinikumar ; Li, Daofeng ; Lowdon, Rebecca ; Mercer, Tim R ; Neph, Shane J ; Onuchic, Vitor ; Polak, Paz ; Rajagopal, Nisha ; Ray, Pradipta ; Sallari, Richard C ; Siebenthall, Kyle T ; Sinnott-Armstrong, Nicholas ; Stevens, Michael ; Thurman, Robert E ; Wu, Jie ; Zhang, Bo ; Zhou, Xin ; Beaudet, Arthur E ; Boyer, Laurie A ; De Jager, Philip ; Farnham, Peggy J ; Fisher, Susan J ; Haussler, David ; Jones, Steven ; Li, Wei ; Marra, Marco ; Mcmanus, Michael T ; Sunyaev, Shamil ; Thomson, James A ; Tlsty, Thea D ; Tsai, Li-Huei ; Wang, Wei ; Waterland, Robert A ; Zhang, Michael ; Chadwick, Lisa H ; Bernstein, Bradley E ; Costello, Joseph F ; Ecker, Joseph R ; Hirst, Martin ; Meissner, Alexander ; Milosavljevic, Aleksandar ; Ren, Bing ; Stamatoyannopoulos, John A ; Wang, Ting ; Kellis, Manolis;

Nature, Feb 19, 2015, Vol.518(7539), p.317(32) [Peer Reviewed Journal]

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A CRISPR Connection between Chromatin Topology and Genetic Disorders

Ren, Bing ; Dixon, Jesse R.

Cell, May 21, 2015, Vol.161(5), p.955(3) [Peer Reviewed Journal]

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Human body epigenome maps reveal noncanonical DNA methylation variation.(RESEARCH: LETTER)(Report)

Schultz, Matthew D. ; He, Yupeng ; Whitaker, John W. ; Hariharan, Manoj ; Mukamel, Eran A. ; Leung, Danny ; Rajagopal, Nisha ; Nery, Joseph R. ; Urich, Mark A. ; Chen, Huaming ; Lin, Shin ; Lin, Yiing ; Jung, Inkyung ; Schmitt, Anthony D. ; Selvaraj, Siddarth ; Ren, Bing ; Sejnowski, Terrence J. ; Wang, Wei ; Ecker, Joseph R.

Nature, July 9, 2015, Vol.523(7559), p.212(16) [Peer Reviewed Journal]

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Integrative analysis of haplotype-resolved epigenomes across human tissues.(RESEARCH: LETTER)(Report)

Leung, Danny ; Jung, Inkyung ; Rajagopal, Nisha ; Schmitt, Anthony ; Selvaraj, Siddarth ; Lee, Ah Young ; Yen, Chia-An ; Lin, Shin ; Lin, Yiing ; Qiu, Yunjiang ; Xie, Wei ; Yue, Feng ; Hariharan, Manoj ; Ray, Pradipta ; Kuan, Samantha ; Edsall, Lee ; Yang, Hongbo ; Chi, Neil C. ; Zhang, Michael Q. ; Ecker, Joseph R. ; Ren, Bing

Nature, Feb 19, 2015, Vol.518(7539), p.350(15) [Peer Reviewed Journal]

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[N.sup.6]-methyladenosine-dependent regulation of messenger RNA stability.(LETTER)(Report)

Wang, Xiao ; Lu, Zhike ; Gomez, Adrian ; Hon, Gary C. ; Yue, Yanan ; Han, Dali ; Fu, Ye ; Parisien, Marc ; Dai, Qing ; Jia, Guifang ; Ren, Bing ; Pan, Tao ; He, Chuan

Nature, Jan 2, 2014, Vol.505(7481), p.117(21) [Peer Reviewed Journal]

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A CRISPR Connection between Chromatin Topology and Genetic Disorders

Ren, Bing ; Dixon, Jesse R.

Cell, May 21, 2015, Vol.161(5), p.955 [Peer Reviewed Journal]

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Chromatin architecture reorganization during stem cell differentiation.(RESEARCH: ARTICLE)(Report)

Dixon, Jesse R. ; Jung, Inkyung ; Selvaraj, Siddarth ; Shen, Yin ; Antosiewicz- Bourget, Jessica E. ; Lee, Ah Young ; Ye, Zhen ; Kim, Audrey ; Rajagopal, Nisha ; Xie, Wei ; Diao, Yarui ; Liang, Jing ; Zhao, Huimin ; Lobanenkov, Victor V. ; Ecker, Joseph R. ; Thomson, James A. ; Ren, Bing

Nature, Feb 19, 2015, Vol.518(7539), p.331(23) [Peer Reviewed Journal]

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A high-resolution map of the three-dimensional chromatin interactome in human cells.(RESEARCH: LETTER)(Report)

Jin, Fulai ; Li, Yan ; Dixon, Jesse R. ; Selvaraj, Siddarth ; Ye, Zhen ; Lee, Ah Young ; Yen, Chia - An ; Schmitt, Anthony D. ; Espinoza, Celso A. ; Ren, Bing

Nature, Nov 14, 2013, Vol.503(7475), p.290(5) [Peer Reviewed Journal]

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Closing the distance on obesity culprits.(GENETICS)

Gorkin, David U. ; Ren, Bing

Nature, March 20, 2014, Vol.507(7492), p.309(2) [Peer Reviewed Journal]

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