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Evolutionary Patterns and Processes: Lessons from Ancient DNA.

Leonardi, Michela ; Librado, Pablo ; Der Sarkissian, Clio ; Schubert, Mikkel ; Alfarhan, Ahmed H ; Alquraishi, Saleh A ; Al-Rasheid, Khaled A S ; Gamba, Cristina ; Willerslev, Eske ; Orlando, Ludovic Leonardi, Michela (correspondence author) ; Leonardi, Michela (record owner) January 1, 2017

Systematic biology, Vol.66(1), pp.e1-e29 [Peer Reviewed Journal]

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Speciation with gene flow in equids despite extensive chromosomal plasticity.(EVOLUTION)(Author abstract)

Jonsson, Hakon ; Schubert, Mikkel ; Seguin-Orlando, Andaine ; Ginolhac, Aurelien ; Petersen, Lillian ; Fumagalli, Matteo ; Albrechtsen, Anders ; Petersen, Bent ; Korneliussen, Thorfinn S. ; Vilstrup, Julia T. ; Lear, Teri ; Myka, Jennifer Leigh ; Lundquist, Judith ; Miller, Donald C. ; Alfarhan, Ahmed H. ; Alquraishi, Saleh A. ; Al-Rasheid, Khaled A.S. ; Stagegaard, Julia ; Strauss, Gunter ; Bertelsen, Mads Frost ; Sicheritz-Ponten, Thomas ; Antczak, Douglas F. ; Bailey, Ernest ; Nielsen, Rasmus ; Willerslev, Eske ; Orlando, Ludovic

Proceedings of the National Academy of Sciences of the United States, Dec 30, Vol.111(52), p.18655(6) [Peer Reviewed Journal]

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Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes.(Research Article)

Seguin - Orlando, Andaine ; Schubert, Mikkel ; Clary, Joel ; Stagegaard, Julia ; Alberdi, Maria T. ; Prado, Jose Luis ; Prieto, Alfredo ; Willerslev, Eske ; Orlando, Ludovic

PLoS ONE, Oct 29, 2013, Vol.8(10), p.e78575 [Peer Reviewed Journal]

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Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.(PNAS PLUS: EVOLUTION)(Report)

Librado, Pablo ; Der Sarkissian, Clio ; Ermini, Luca ; Schubert, Mikkel ; Jonsson, Hakon ; Albrechtsen, Anders ; Fumagalli, Matteo ; Yang, Melinda A. ; Gamba, Cristina ; Seguin-Orlando, Andaine ; Mortensen, Cecilie D. ; Petersen, Bent ; Hoover, Cindi A. ; Lorente-Galdos, Belen ; Nedoluzhko, Artem ; Boulygina, Eugenia ; Tsygankova, Svetlana ; Neuditschko, Markus ; Jagannathan, Vidhya ; Theves, Catherine ; Alfarhan, Ahmed H. ; Alquraishi, Saleh A. ; Rasheid, Khaled A.S. Al- ; Sicheritz-Ponten, Thomas ; Popov, Ruslan ; Grigoriev, Semyon ; Alekseev, Anatoly N. ; Rubin, Edward M. ; Mccue, Molly ; Rieder, Stefan ; Leeb, Tosso ; Tikhonov, Alexei ; Crubezy, Eric ; Slatkin, Montgomery ; Marques-Bonet, Tomas ; Nielsen, Rasmus ; Willerslev, Eske ; Kantanen, Juha ; Prokhortchouk, Egor ; Orlando, Ludovic

Proceedings of the National Academy of Sciences of the United States, Dec 15, 2015, Vol.112(50), p.E6889 [Peer Reviewed Journal]

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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.(Research: Letter)(Report)

Orlando, Ludovic ; Ginolhac, Aurélien ; Zhang, Guojie ; Froese, Duane ; Albrechtsen, Anders ; Stiller, Mathias ; Schubert, Mikkel ; Cappellini, Enrico ; Petersen, Bent ; Moltke, Ida ; Johnson, Philip ; Fumagalli, Matteo ; Vilstrup, Julia ; Raghavan, Maanasa ; Korneliussen, Thorfinn ; Malaspinas, Anna-Sapfo ; Vogt, Josef ; Szklarczyk, Damian ; Kelstrup, Christian ; Vinther, Jakob ; Dolocan, Andrei ; Stenderup, Jesper ; Velazquez, Amhed ; Cahill, James ; Rasmussen, Morten ; Wang, Xiaoli ; Min, Jiumeng ; Zazula, Grant ; Seguin-Orlando, Andaine ; Mortensen, Cecilie ; Magnussen, Kim ; Thompson, John ; Weinstock, Jacobo ; Gregersen, Kristian ; Røed, Knut ; Eisenmann, Véra ; Rubin, Carl ; Miller, Donald ; Antczak, Douglas ; Bertelsen, Mads ; Brunak, Søren ; Al-Rasheid, Khaled ; Ryder, Oliver ; Andersson, Leif ; Mundy, John ; Krogh, Anders ; Gilbert, M ; Kjær, Kurt ; Sicheritz-Ponten, Thomas ; Jensen, Lars ; Olsen, Jesper ; Hofreiter, Michael ; Nielsen, Rasmus ; Shapiro, Beth ; Wang, Jun ; Willerslev, Eske;

Nature, July 4, 2013, Vol.499(7456), p.74(8) [Peer Reviewed Journal]

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Mitochondrial Genome Sequencing in Mesolithic North East Europe Unearths a New Sub-Clade within the Broadly Distributed Human Haplogroup C1

Der Sarkissian, Clio ; Brotherton, Paul ; Balanovsky, Oleg ; Templeton, Jennifer E. L ; Llamas, Bastien ; Soubrier, Julien ; Moiseyev, Vyacheslav ; Khartanovich, Valery ; Cooper, Alan ; Haak, Wolfgang ; Achilli, Alessandro

PLoS ONE, 2014, Vol.9(2) [Peer Reviewed Journal]

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Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, Simon ; Allentoft, Morten Erik ; Nielsen, Kasper ; Orlando, Ludovic ; Sikora, Martin ; Sjogren, Karl-Goran ; Pedersen, Anders Gorm ; Schubert, Mikkel ; Van Dam, Alex ; Kapel, Christian Moliin Outzen ; Nielsen, Henrik Bjorn ; Brunak, Soren ; Avetisyan, Pavel ; Epimakhov, Andrey ; Khalyapin, Mikhail Viktorovich ; Gnuni, Artak ; Kriiska, Aivar ; Lasak, Irena ; Metspalu, Mait ; Moiseyev, Vyacheslav ; Gromov, Andrei ; Pokutta, Dalia ; Saag, Lehti ; Varul, Liivi ; Yepiskoposyan, Levon ; Sicheritz-Ponten, Thomas ; Foley, Robert A. ; Lahr, Marta Mirazon ; Nielsen, Rasmus ; Kristiansen, Kristian ; Willerslev, Eske;

Cell, Oct 22, 2015, Vol.163(3), p.571(12) [Peer Reviewed Journal]

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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.(PROTOCOL)(Report)

Schubert, Mikkel ; Ermini, Luca ; Sarkissian, Clio Der ; Jonsson, Hakon ; Ginolhac, Aurelien ; Schaefer, Robert ; Martin, Michael D. ; Fernandez, Ruth ; Kircher, Martin ; Mccue, Molly ; Willerslev, Eske ; Orlando, Ludovic

Nature Protocols, 2014, Vol.9(5), p.1056(27) [Peer Reviewed Journal]

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