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Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.(REPORTS)(Author abstract)

Kashtan, Nadav ; Roggensack, Sara E. ; Rodrigue, Sebastien ; Thompson, Jessie W. ; Biller, Steven J. ; Coe, Allison ; Ding, Huiming ; Marttinen, Pekka ; Malmstrom, Rex R. ; Stocker, Roman ; Follows, Michael J. ; Stepanauskas, Ramunas ; Chisholm, Sallie W.

Science, April 25, 2014, Vol.344(6182), p.416(5) [Peer Reviewed Journal]

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Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.(ENVIRONMENTAL SCIENCES)(Author abstract)

Swan, Brandon K. ; Tupper, Ben ; Sczyrba, Alexander ; Lauro, Federico M. ; Martinez - Garcia, Manuel ; Gonzalez, Jose M. ; Luo, Haiwei ; Wright, Jody J. ; Landry, Zachary C. ; Hanson, Niels W. ; Thompson, Brian P. ; Poulton, Nicole J. ; Schwientek, Patrick ; Acinas, Silvia G. ; Giovannoni, Stephen J. ; Moran, Mary Ann ; Hallam, Steven J. ; Cavicchioli, Ricardo ; Woyke, Tanja ; Stepanauskas, Ramunas

Proceedings of the National Academy of Sciences of the United States, July 9, 2013, Vol.110(28), p.11463(6) [Peer Reviewed Journal]

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Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.(REPORTS)(Author abstract)(Report)

Swan, Brandon K. ; Martinez - Garcia, Manuel ; Preston, Christina M. ; Sczyrba, Alexander ; Woyke, Tanja ; Lamy, Dominique ; Reinthaler, Thomas ; Poulton, Nicole J. ; Masland, E. Dashiell P. ; Gomez, Monica Lluesma ; Sieracki, Michael E. ; Delong, Edward F. ; Herndl, Gerhard J. ; Stepanauskas, Ramunas

Science, Sept 2, 2011, Vol.333(6047), p.1296(5) [Peer Reviewed Journal]

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Insights into the phylogeny and coding potential of microbial dark matter.(RESEARCH: ARTICLE)(Report)

Rinke, Christian ; Schwientek, Patrick ; Sczyrba, Alexander ; Ivanova, Natalia N. ; Anderson, Iain J. ; Cheng, Jan-Fang ; Darling, Aaron ; Malfatti, Stephanie ; Swan, Brandon K. ; Gies, Esther A. ; Dodsworth, Jeremy A. ; Hedlund, Brian P. ; Tsiamis, George ; Sievert, Stefan M. ; Liu, Wen-Tso ; Eisen, Jonathan A. ; Hallam, Steven J. ; Kyrpides, Nikos C. ; Stepanauskas, Ramunas ; Rubin, Edward M. ; Hugenholtz, Philip ; Woyke, Tanja

Nature, July 25, 2013, Vol.499(7459), p.431(7) [Peer Reviewed Journal]

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Ecological genomics of the uncultivated marine Roseobacter lineage CHAB-I-5.(Report)

Yao Zhang ; Ying Sun ; Nianzhi Jiao ; Stepanauskas, Ramunas ; Haiwei Luo

Applied and Environmental Microbiology, April 1, 2016, Vol.82(7), pp.2100-12 [Peer Reviewed Journal]

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Predominant Archaea in marine sediments degrade detrital proteins.(LETTER)(Report)

Lloyd, Karen G. ; Schreiber, Lars ; Petersen, Dorthe G. ; Kjeldsen, Kasper U. ; Lever, Mark A. ; Steen, Andrew D. ; Stepanauskas, Ramunas ; Richter, Michael ; Kleindienst, Sara ; Lenk, Sabine ; Schramm, Andreas ; Jorgensen, Bo Barker

Nature, April 11, 2013, Vol.496(7444), p.215(6) [Peer Reviewed Journal]

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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification (Single Cell Whole Genome Amplification)

Woyke, Tanja ; Sczyrba, Alexander ; Lee, Janey ; Rinke, Christian ; Tighe, Damon ; Clingenpeel, Scott ; Malmstrom, Rex ; Stepanauskas, Ramunas ; Cheng, Jan-Fang Lespinet, Olivier (Editor)

PLoS ONE, 2011, Vol.6(10), p.e26161 [Peer Reviewed Journal]

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.(Report)

Bowers, Robert M ; Kyrpides, Nikos C ; Stepanauskas, Ramunas ; Harmon-Smith, Miranda ; Doud, Devin ; Reddy, T B K ; Schulz, Frederik ; Jarett, Jessica ; Rivers, Adam R ; Eloe-Fadrosh, Emiley A ; Tringe, Susannah G ; Ivanova, Natalia N ; Copeland, Alex ; Clum, Alicia ; Becraft, Eric D ; Malmstrom, Rex R ; Birren, Bruce ; Podar, Mircea ; Bork, Peer ; Weinstock, George M ; Garrity, George M ; Dodsworth, Jeremy A ; Yooseph, Shibu ; Sutton, Granger ; Glockner, Frank O ; Gilbert, Jack A ; Nelson, William C ; Hallam, Steven J ; Jungbluth, Sean P ; Ettema, Thijs J G ; Tighe, Scott ; Konstantinidis, Konstantinos T ; Liu, Wen-Tso ; Baker, Brett J ; Rattei, Thomas ; Eisen, Jonathan A ; Hedlund, Brian ; Mcmahon, Katherine D ; Fierer, Noah ; Knight, Rob ; Finn, Rob ; Cochrane, Guy ; Karsch-Mizrachi, Ilene ; Tyson, Gene W ; Rinke, Christian ; Schriml, Lynn ; Hugenholtz, Philip ; Yilmaz, Pelin ; Meyer, Folker ; Lapidus, Alla ; Parks, Donovan H ; Eren, A M ; Banfield, Jillian F ; Woyke, Tanja

Nature Biotechnology, 2017, Vol.35(8), p.725(7) [Peer Reviewed Journal]

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What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH (Identity of Leptothrix ochracea)

Fleming, Emily J ; Langdon, Amy E ; Martinez-Garcia, Manuel ; Stepanauskas, Ramunas ; Poulton, Nicole J ; Masland, E. Dashiell P ; Emerson, David Stal, Lucas (Editor)

PLoS ONE, 2011, Vol.6(3), p.e17769 [Peer Reviewed Journal]

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Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia (Single Cell Genomics of Polysaccharide Degraders)

Martinez-Garcia, Manuel ; Brazel, David M ; Swan, Brandon K ; Arnosti, Carol ; Chain, Patrick S. G ; Reitenga, Krista G ; Xie, Gary ; Poulton, Nicole J ; Gomez, Monica Lluesma ; Masland, Dashiell E. D ; Thompson, Brian ; Bellows, Wendy K ; Ziervogel, Kai ; Lo, Chien-Chi ; Ahmed, Sanaa ; Gleasner, Cheryl D ; Detter, Chris J ; Stepanauskas, Ramunas Ravel, Jacques (Editor)

PLoS ONE, 2012, Vol.7(4), p.e35314 [Peer Reviewed Journal]

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