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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.(Report)

Mukherjee, Supratim ; Seshadri, Rekha ; Varghese, Neha J ; Eloe - Fadrosh, Emiley A ; Meier - Kolthoff, Jan P ; Goker, Markus ; Coates, R Cameron ; Hadjithomas, Michalis ; Pavlopoulos, Georgios A ; Paez - Espino, David ; Yoshikuni, Yasuo ; Visel, Axel ; Whitman, William B ; Garrity, George M ; Eisen, Jonathan A ; Hugenholtz, Philip ; Pati, Amrita ; Ivanova, Natalia N ; Woyke, Tanja ; Klenk, Hans - Peter ; Kyrpides, Nikos C

Nature Biotechnology, July, 2017, Vol.35(7), p.676(8) [Peer Reviewed Journal]

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Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.(Report)

Aylward, Frank O. ; Mcdonald, Bradon R. ; Adams, Sandra M. ; Valenzuela, Alejandra ; Schmidt, Rebeccah A. ; Goodwin, Lynne A. ; Woyke, Tanja ; Currie, Cameron R. ; Suen, Garret ; Poulsen, Michael

Applied and Environmental Microbiology, June 15, 2013, Vol.79(12), pp.3724-3733 [Peer Reviewed Journal]

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Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli

Duell, Elke R. ; D'Agostino, Paul M. ; Shapiro, Nicole ; Woyke, Tanja ; Fuchs, Thilo M. ; Gulder, Tobias A. M.

Microbial Cell Factories, Feb 7, 2019, Vol.18(1) [Peer Reviewed Journal]

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Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".(Report)

Hedlund, Brian P. ; Dodsworth, Jeremy A. ; Murugapiran, Senthil K. ; Rinke, Christian ; Woyke, Tanja

Extremophiles: Life Under Extreme Conditions, Sept, 2014, Vol.18(5), p.865(11) [Peer Reviewed Journal]

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.(Report)

Bowers, Robert M ; Kyrpides, Nikos C ; Stepanauskas, Ramunas ; Harmon-Smith, Miranda ; Doud, Devin ; Reddy, T B K ; Schulz, Frederik ; Jarett, Jessica ; Rivers, Adam R ; Eloe-Fadrosh, Emiley A ; Tringe, Susannah G ; Ivanova, Natalia N ; Copeland, Alex ; Clum, Alicia ; Becraft, Eric D ; Malmstrom, Rex R ; Birren, Bruce ; Podar, Mircea ; Bork, Peer ; Weinstock, George M ; Garrity, George M ; Dodsworth, Jeremy A ; Yooseph, Shibu ; Sutton, Granger ; Glockner, Frank O ; Gilbert, Jack A ; Nelson, William C ; Hallam, Steven J ; Jungbluth, Sean P ; Ettema, Thijs J G ; Tighe, Scott ; Konstantinidis, Konstantinos T ; Liu, Wen-Tso ; Baker, Brett J ; Rattei, Thomas ; Eisen, Jonathan A ; Hedlund, Brian ; Mcmahon, Katherine D ; Fierer, Noah ; Knight, Rob ; Finn, Rob ; Cochrane, Guy ; Karsch-Mizrachi, Ilene ; Tyson, Gene W ; Rinke, Christian ; Schriml, Lynn ; Hugenholtz, Philip ; Yilmaz, Pelin ; Meyer, Folker ; Lapidus, Alla ; Parks, Donovan H ; Eren, A M ; Banfield, Jillian F ; Woyke, Tanja

Nature Biotechnology, 2017, Vol.35(8), p.725(7) [Peer Reviewed Journal]

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Minimum Information about an Uncultivated Virus Genome (MIUViG).(Report)

Roux, Simon ; Adriaenssens, Evelien M ; Dutilh, Bas E ; Koonin, Eugene V ; Kropinski, Andrew M ; Krupovic, Mart ; Kuhn, Jens H ; Lavigne, Rob ; Brister, J Rodney ; Varsani, Arvind ; Amid, Clara ; Aziz, Ramy K ; Bordenstein, Seth R ; Bork, Peer ; Breitbart, Mya ; Cochrane, Guy R ; Daly, Rebecca A ; Desnues, Christelle ; Duhaime, Melissa B ; Emerson, Joanne B ; Enault, Francois ; Fuhrman, Jed A ; Hingamp, Pascal ; Hugenholtz, Philip ; Hurwitz, Bonnie L ; Ivanova, Natalia N ; Labonte, Jessica M ; Lee, Kyung-Bum ; Malmstrom, Rex R ; Martinez-Garcia, Manuel ; Mizrachi, Ilene Karsch ; Ogata, Hiroyuki ; Paez-Espino, David ; Petit, Marie-Agnes ; Putonti, Catherine ; Rattei, Thomas ; Reyes, Alejandro ; Rodriguez-Valera, Francisco ; Rosario, Karyna ; Schriml, Lynn ; Schulz, Frederik ; Steward, Grieg F ; Sullivan, Matthew B ; Sunagawa, Shinichi ; Suttle, Curtis A ; Temperton, Ben ; Tringe, Susannah G ; Thurber, Rebecca Vega ; Webster, Nicole S ; Whiteson, Katrine L ; Wilhelm, Steven W ; Wommack, K Eric ; Woyke, Tanja ; Wrighton, Kelly C ; Yilmaz, Pelin ; Yoshida, Takashi ; Young, Mark J ; Yutin, Natalya ; Allen, Lisa Zeigler ; Kyrpides, Nikos C ; Eloe-Fadrosh, Emiley A

Nature Biotechnology, 2019, Vol.37(1), p.29(9) [Peer Reviewed Journal]

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