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The landscape of accessible chromatin in mammalian preimplantation embryos.(RESEARCH: ARTICLE)(Report)

Wu, Jingyi ; Huang, Bo ; Chen, He ; Yin, Qiangzong ; Liu, Yang ; Xiang, Yunlong ; Zhang, Bingjie ; Liu, Bofeng ; Wang, Qiujun ; Xia, Weikun ; Li, Wenzhi ; Li, Yuanyuan ; Ma, Jing ; Peng, Xu ; Zheng, Hui ; Ming, Jia ; Zhang, Wenhao ; Zhang, Jing ; Tian, Geng ; Xu, Feng ; Chang, Zai ; Na, Jie ; Yang, Xuerui ; Xie, Wei

Nature, June 30, 2016, Vol.534(7609), p.652(19) [Peer Reviewed Journal]

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Integrative analysis of 111 reference human epigenomes.(RESEARCH: ARTICLE)(Report)

Kundaje, Anshul ; Meuleman, Wouter ; Ernst, Jason ; Bilenky, Misha ; Yen, Angela ; Kheradpour, Pouya ; Zhang, Zhizhuo ; Heravi-Moussavi, Alireza ; Liu, Yaping ; Amin, Viren ; Ziller, Michael J ; Whitaker, John W ; Schultz, Matthew D ; Sandstrom, Richard S ; Eaton, Matthew L ; Wu, Yi-Chieh ; Wang, Jianrong ; Ward, Lucas D ; Sarkar, Abhishek ; Quon, Gerald ; Pfenning, Andreas ; Wang, Xinchen ; Claussnitzer, Melina ; Coarfa, Cristian ; Harris, R Alan ; Shoresh, Noam ; Epstein, Charles B ; Gjoneska, Elizabeta ; Leung, Danny ; Xie, Wei ; Hawkins, R David ; Lister, Ryan ; Hong, Chibo ; Gascard, Philippe ; Mungall, Andrew J ; Moore, Richard ; Chuah, Eric ; Tam, Angela ; Canfield, Theresa K ; Hansen, R Scott ; Kaul, Rajinder ; Sabo, Peter J ; Bansal, Mukul S ; Carles, Annaick ; Dixon, Jesse R ; Farh, Kai-How ; Feizi, Soheil ; Karlic, Rosa ; Kim, Ah-Ram ; Kulkarni, Ashwinikumar ; Li, Daofeng ; Lowdon, Rebecca ; Mercer, Tim R ; Neph, Shane J ; Onuchic, Vitor ; Polak, Paz ; Rajagopal, Nisha ; Ray, Pradipta ; Sallari, Richard C ; Siebenthall, Kyle T ; Sinnott-Armstrong, Nicholas ; Stevens, Michael ; Thurman, Robert E ; Wu, Jie ; Zhang, Bo ; Zhou, Xin ; Beaudet, Arthur E ; Boyer, Laurie A ; De Jager, Philip ; Farnham, Peggy J ; Fisher, Susan J ; Haussler, David ; Jones, Steven ; Li, Wei ; Marra, Marco ; Mcmanus, Michael T ; Sunyaev, Shamil ; Thomson, James A ; Tlsty, Thea D ; Tsai, Li-Huei ; Wang, Wei ; Waterland, Robert A ; Zhang, Michael ; Chadwick, Lisa H ; Bernstein, Bradley E ; Costello, Joseph F ; Ecker, Joseph R ; Hirst, Martin ; Meissner, Alexander ; Milosavljevic, Aleksandar ; Ren, Bing ; Stamatoyannopoulos, John A ; Wang, Ting ; Kellis, Manolis;

Nature, Feb 19, 2015, Vol.518(7539), p.317(32) [Peer Reviewed Journal]

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Allelic reprogramming of the histone modification H3K4me3 in early mammalian development.(Report)

Zhang, Bingjie ; Zheng, Hui ; Huang, Bo ; Li, Wenzhi ; Xiang, Yunlong ; Peng, Xu ; Ming, Jia ; Wu, Xiaotong ; Zhang, Yu ; Xu, Qianhua ; Liu, Wenqiang ; Kou, Xiaochen ; Zhao, Yanhong ; He, Wenteng ; Li, Chong ; Chen, Bo ; Li, Yuanyuan ; Wang, Qiujun ; Ma, Jing ; Yin, Qiangzong ; Kee, Kehkooi ; Meng, Anming ; Gao, Shaorong ; Xu, Feng ; Na, Jie ; Xie, Wei

Nature, Sept 22, 2016, Vol.537(7621), p.553 [Peer Reviewed Journal]

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Chromatin architecture reorganization during stem cell differentiation.(RESEARCH: ARTICLE)(Report)

Dixon, Jesse R. ; Jung, Inkyung ; Selvaraj, Siddarth ; Shen, Yin ; Antosiewicz- Bourget, Jessica E. ; Lee, Ah Young ; Ye, Zhen ; Kim, Audrey ; Rajagopal, Nisha ; Xie, Wei ; Diao, Yarui ; Liang, Jing ; Zhao, Huimin ; Lobanenkov, Victor V. ; Ecker, Joseph R. ; Thomson, James A. ; Ren, Bing

Nature, Feb 19, 2015, Vol.518(7539), p.331(23) [Peer Reviewed Journal]

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Integrative analysis of haplotype-resolved epigenomes across human tissues.(RESEARCH: LETTER)(Report)

Leung, Danny ; Jung, Inkyung ; Rajagopal, Nisha ; Schmitt, Anthony ; Selvaraj, Siddarth ; Lee, Ah Young ; Yen, Chia-An ; Lin, Shin ; Lin, Yiing ; Qiu, Yunjiang ; Xie, Wei ; Yue, Feng ; Hariharan, Manoj ; Ray, Pradipta ; Kuan, Samantha ; Edsall, Lee ; Yang, Hongbo ; Chi, Neil C. ; Zhang, Michael Q. ; Ecker, Joseph R. ; Ren, Bing

Nature, Feb 19, 2015, Vol.518(7539), p.350(15) [Peer Reviewed Journal]

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Neuroligin 1 regulates spines and synaptic plasticity via LIMK1/cofilin-mediated actin reorganization

Liu, An ; Zhou, Zikai ; Dang, Rui ; Zhu, Yuehua ; Qi, Junxia ; He, Guiqin ; Leung, Celeste ; Pak, Daniel ; Jia, Zhengping ; Xie, Wei

The Journal of Cell Biology, 2016, Vol.212(4), p.449-463 [Peer Reviewed Journal]

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Protective effects of dietary supplementation with a combination of nutrients in a transgenic mouse model of Alzheimer's disease.(Report)

Wang, Shengyuan ; Cu, Yu ; Wang, Chao ; Xie, Wei ; Ma, Lan ; Zhu, Jinfeng ; Zhang, Yan ; Dang, Rui ; Wang, Decai ; Wu, Yonghui ; Wu, Qunhong

PLoS ONE, Nov 25, 2015, Vol.10(11) [Peer Reviewed Journal]

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MicroRNA-590 Inhibits Lipoprotein Lipase Expression and Prevents Atherosclerosis in apoE Knockout Mice.(Report)

He, Ping-Ping ; Ouyang, Xin-Ping ; Li, Yuan ; Lv, Yun-Cheng ; Wang, Zong-Bao ; Yao, Feng ; Xie, Wei ; Tan, Yu-Lin ; Li, Liang ; Zhang, Min ; Lan, Gang ; Gong, Duo ; Cheng, Hai-Peng ; Zhong, Hui-Juan ; Liu, Dan ; Huang, Chong ; Li, Zhao-Xia ; Zheng, Xi-Long ; Yin, Wei-Dong ; Tang, Chao-Ke

PLoS ONE, Sept 23, 2015, Vol.10(9) [Peer Reviewed Journal]

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Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes.(REPORTS)(Author abstract)(Report)

Wu, Hao ; Coskun, Volkan ; Tao, Jifang ; Xie, Wei ; Ge, Weihong ; Yoshikawa, Kazuaki ; Li, En ; Zhang, Yi ; Sun, Yi Eve

Science, July 23, 2010, Vol.329(5990), p.444(5) [Peer Reviewed Journal]

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Identifying protein complex by integrating characteristic of core-attachment into dynamic PPI network

Shen, Xianjun ; Yi, Li ; Jiang, Xingpeng ; He, Tingting ; Yang, Jincai ; Xie, Wei ; Hu, Po ; Hu, Xiaohua Mande, Shekhar C. (editor)

PLoS ONE, 2017, Vol.12(10) [Peer Reviewed Journal]

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