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The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.(Report)

Mallick, Swapan ; Li, Heng ; Lipson, Mark ; Mathieson, Iain ; Gymrek, Melissa ; Racimo, Fernando ; Zhao, Mengyao ; Chennagiri, Niru ; Nordenfelt, Susanne ; Tandon, Arti ; Skoglund, Pontus ; Lazaridis, Iosif ; Sankararaman, Sriram ; Fu, Qiaomei ; Rohland, Nadin ; Renaud, Gabriel ; Erlich, Yaniv ; Willems, Thomas ; Gallo, Carla ; Spence, Jeffrey P. ; Song, Yun S. ; Poletti, Giovanni ; Balloux, Francois ; Van Driem, George ; De Knijff, Peter ; Romero, Irene Gallego ; Jha, Aashish R. ; Behar, Doron M. ; Bravi, Claudio M. ; Capelli, Cristian ; Hervig, Tor ; Moreno - Estrada, Andres ; Posukh, Olga L. ; Balanovska, Elena ; Balanovsky, Oleg ; Karachanak - Yankova, Sena ; Sahakyan, Hovhannes ; Toncheva, Draga ; Yepiskoposyan, Levon ; Tyler - Smith, Chris ; Xue, Yali ; Abdullah, M. Syafiq ; Ruiz - Linares, Andres ; Beall, Cynthia M. ; Di Rienzo, Anna ; Jeong, Choongwon ; Starikovskaya, Elena B. ; Metspalu, Ene ; Parik, Jri ; Villems, Richard ; Henn, Brenna M. ; Hodoglugil, Ugur ; Mahley, Robert ; Sajantila, Antti ; Stamatoyannopoulos, George ; Wee, Joseph T. S. ; Khusainova, Rita ; Khusnutdinova, Elza ; Litvinov, Sergey ; Ayodo, George ; Comas, David ; Hammer, Michael F. ; Kivisild, Toomas ; Klitz, William ; Winkler, Cheryl A. ; Labuda, Damian ; Bamshad, Michael ; Jorde, Lynn B. ; Tishkoff, Sarah A. ; Watkins, W. Scott ; Metspalu, Mait ; Dryomov, Stanislav ; Sukernik, Rem ; Singh, Lalji ; Thangaraj, Kumarasamy ; Pbo, Svante ; Kelso, Janet ; Patterson, Nick ; Reich, David

Nature, Oct 13, 2016, Vol.538(7624), p.201 [Peer Reviewed Journal]

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana.(Report)

Gan, Xiangchao ; Stegle, Oliver ; Behr, Jonas ; Steffen, Joshua G. ; Drewe, Philipp ; Hildebrand, Katie L. ; Lyngsoe, Rune ; Schultheiss, Sebastian J. ; Osborne, Edward J. ; Sreedharan, Vipin T. ; Kahles, Andre ; Bohnert, Regina ; Jean, Geraldine ; Derwent, Paul ; Kersey, Paul ; Belfield, Eric J. ; Harberd, Nicholas P. ; Kemen, Eric ; Toomajian, Christopher ; Kover, Paula X. ; Clark, Richard M. ; Ratsch, Gunnar ; Mott, Richard

Nature, Sept 22, 2011, Vol.477(7365), p.419(5) [Peer Reviewed Journal]

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The landscape of recombination in African Americans.(Report)

Hinch, Anjali G ; Tandon, Arti ; Patterson, Nick ; Song, Yunli ; Rohland, Nadin ; Palmer, Cameron D ; Chen, Gary K ; Wang, Kai ; Buxbaum, Sarah G ; Akylbekova, Ermeg L ; Aldrich, Melinda C ; Ambrosone, Christine B ; Amos, Christopher ; Bandera, Elisa V ; Berndt, Sonja I ; Bernstein, Leslie ; Blot, William J ; Bock, Cathryn H ; Boerwinkle, Eric ; Cai, Qiuyin ; Caporaso, Neil ; Casey, Graham ; Cupples, L Adrienne ; Deming, Sandra L ; Diver, W Ryan ; Divers, Jasmin ; Fornage, Myriam ; Gillanders, Elizabeth M ; Glessner, Joseph ; Harris, Curtis C ; Hu, Jennifer J ; Ingles, Sue A ; Isaacs, William ; John, Esther M ; Kao, W H Linda ; Keating, Brendan ; Kittles, Rick A ; Kolonel, Laurence N ; Larkin, Emma ; Le Marchand, Loic ; Mcneill, Lorna H ; Millikan, Robert C ; Murphy, Adam ; Musani, Solomon ; Neslund-Dudas, Christine ; Nyante, Sarah ; Papanicolaou, George J ; Press, Michael F ; Psaty, Bruce M ; Reiner, Alex P ; Rich, Stephen S ; Rodriguez-Gil, Jorge L ; Rotter, Jerome I ; Rybicki, Benjamin A ; Schwartz, Ann G ; Signorello, Lisa B ; Spitz, Margaret ; Strom, Sara S ; Thun, Michael J ; Tucker, Margaret A ; Wang, Zhaoming ; Wiencke, John K ; Witte, John S ; Wrensch, Margaret ; Wu, Xifeng ; Yamamura, Yuko ; Zanetti, Krista A ; Zheng, Wei ; Ziegler, Regina G ; Zhu, Xiaofeng ; Redline, Susan ; Hirschhorn, Joel N ; Henderson, Brian E ; Taylor, Herman A ; Price, Alkes L ; Hakonarson, Hakon ; Chanock, Stephen J ; Haiman, Christopher A ; Wilson, James G ; Reich, David ; Myers, Simon R;

Nature, August 11, 2011, Vol.476(7359), p.170(8) [Peer Reviewed Journal]

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Integrative analysis of 111 reference human epigenomes.(RESEARCH: ARTICLE)(Report)

Kundaje, Anshul ; Meuleman, Wouter ; Ernst, Jason ; Bilenky, Misha ; Yen, Angela ; Kheradpour, Pouya ; Zhang, Zhizhuo ; Heravi-Moussavi, Alireza ; Liu, Yaping ; Amin, Viren ; Ziller, Michael J ; Whitaker, John W ; Schultz, Matthew D ; Sandstrom, Richard S ; Eaton, Matthew L ; Wu, Yi-Chieh ; Wang, Jianrong ; Ward, Lucas D ; Sarkar, Abhishek ; Quon, Gerald ; Pfenning, Andreas ; Wang, Xinchen ; Claussnitzer, Melina ; Coarfa, Cristian ; Harris, R Alan ; Shoresh, Noam ; Epstein, Charles B ; Gjoneska, Elizabeta ; Leung, Danny ; Xie, Wei ; Hawkins, R David ; Lister, Ryan ; Hong, Chibo ; Gascard, Philippe ; Mungall, Andrew J ; Moore, Richard ; Chuah, Eric ; Tam, Angela ; Canfield, Theresa K ; Hansen, R Scott ; Kaul, Rajinder ; Sabo, Peter J ; Bansal, Mukul S ; Carles, Annaick ; Dixon, Jesse R ; Farh, Kai-How ; Feizi, Soheil ; Karlic, Rosa ; Kim, Ah-Ram ; Kulkarni, Ashwinikumar ; Li, Daofeng ; Lowdon, Rebecca ; Mercer, Tim R ; Neph, Shane J ; Onuchic, Vitor ; Polak, Paz ; Rajagopal, Nisha ; Ray, Pradipta ; Sallari, Richard C ; Siebenthall, Kyle T ; Sinnott-Armstrong, Nicholas ; Stevens, Michael ; Thurman, Robert E ; Wu, Jie ; Zhang, Bo ; Zhou, Xin ; Beaudet, Arthur E ; Boyer, Laurie A ; De Jager, Philip ; Farnham, Peggy J ; Fisher, Susan J ; Haussler, David ; Jones, Steven ; Li, Wei ; Marra, Marco ; Mcmanus, Michael T ; Sunyaev, Shamil ; Thomson, James A ; Tlsty, Thea D ; Tsai, Li-Huei ; Wang, Wei ; Waterland, Robert A ; Zhang, Michael ; Chadwick, Lisa H ; Bernstein, Bradley E ; Costello, Joseph F ; Ecker, Joseph R ; Hirst, Martin ; Meissner, Alexander ; Milosavljevic, Aleksandar ; Ren, Bing ; Stamatoyannopoulos, John A ; Wang, Ting ; Kellis, Manolis;

Nature, Feb 19, 2015, Vol.518(7539), p.317(32) [Peer Reviewed Journal]

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An integrated encyclopedia of DNA elements in the human genome: the ENCODE project consortium.(Report)

Dunham, Ian ; Kundaje, Anshul ; Aldred, Shelley F. ; Collins, Patrick J. ; Davis, Carrie A. ; Doyle, Francis ; Epstein, Charles B. ; Frietze, Seth ; Harrow, Jennifer ; Kaul, Rajinder ; Khatun, Jainab ; Lajoie, Bryan R. ; Landt, Stephen G. ; Lee, Bum - Kyu ; Pauli, Florencia ; Rosenbloom, Kate R. ; Sabo, Peter ; Safi, Alexias ; Sanyal, Amartya ; Shoresh, Noam ; Simon, Jeremy M. ; Song, Lingyun ; Trinklein, Nathan D. ; Altshuler, Robert C. ; Birney, Ewan ; Brown, James B. ; Cheng, Chao ; Djebali, Sarah ; Dong, Xianjun ; Ernst, Jason ; Furey, Terrence S. ; Gerstein, Mark ; Giardine, Belinda ; Greven, Melissa ; Hardison, Ross C. ; Harris, Robert S. ; Herrero, Javier ; Hoffman, Michael M. ; Iyer, Sowmya ; Kellis, Manolis ; Kheradpour, Pouya ; Lassmann, Timo ; Li, Qunhua ; Lin, Xinying ; Marinov, Georgi K. ; Merkel, Angelika ; Mortazavi, Ali ; Parker, Stephen C. J. ; Reddy, Timothy E. ; Rozowsky, Joel ; Schlesinger, Felix ; Thurman, Robert E. ; Wang, Jie ; Ward, Lucas D. ; Whitfield, Troy W. ; Wilder, Steven P. ; Wu, Weisheng ; Xi, Hualin S. ; Yip, Kevin Y. ; Zhuang, Jiali ; Bernstein, Bradley E. ; Green, Eric D. ; Gunter, Chris ; Snyder, Michael ; Pazin, Michael J. ; Lowdon, Rebecca F. ; Dillon, Laura A. L. ; Adams, Leslie B. ; Kelly, Caroline J. ; Zhang, Julia ; Wexler, Judith R. ; Good, Peter J. ; Feingold, Elise A. ; Crawford, Gregory E. ; Dekker, Job ; Elnitski, Laura ; Farnham, Peggy J. ; Giddings, Morgan C. ; Gingeras, Thomas R. ; Guigo, Roderic ; Hubbard, Timothy J. ; Kent, W. James ; Lieb, Jason D. ; Margulies, Elliott H. ; Myers, Richard M. ; Stamatoyannopoulos, John A. ; Tenenbaum, Scott A. ; Weng, Zhiping ; White, Kevin P. ; Wold, Barbara ; Yu, Yanbao ; Wrobel, John ; Risk, Brian A. ; Gunawardena, Harsha P. ; Kuiper, Heather C. ; Maier, Christopher W. ; Xie, Ling ; Chen, Xian ; Mikkelsen, Tarjei S. ; Gillespie, Shawn ; Goren, Alon ; Ram, Oren ; Zhang, Xiaolan ; Wang, Li ; Issner, Robbyn ; Coyne, Michael J. ; Durham, Timothy ; Ku, Manching ; Truong, Thanh ; Eaton, Matthew L. ; Dobin, Alex ; Tanzer, Andrea ; Lagarde, Julien ; Lin, Wei ; Xue, Chenghai ; Williams, Brian A. ; Zaleski, Chris ; Roder, Maik ; Kokocinski, Felix ; Abdelhamid, Rehab F. ; Alioto, Tyler ; Antoshechkin, Igor ; Baer, Michael T. ; Batut, Philippe ; Bell, Ian ; Bell, Kimberly ; Chakrabortty, Sudipto ; Chrast, Jacqueline ; Curado, Joao ; Derrien, Thomas ; Drenkow, Jorg ; Dumais, Erica ; Dumais, Jackie ; Duttagupta, Radha ; Fastuca, Megan ; Fejes - Toth, Kata ; Ferreira, Pedro ; Foissac, Sylvain ; Fullwood, Melissa J. ; Gao, Hui ; Gonzalez, David ; Gordon, Assaf ; Howald, Cedric ; Jha, Sonali ; Johnson, Rory ; Kapranov, Philipp ; King, Brandon ; Kingswood, Colin ; Li, Guoliang ; Luo, Oscar J. ; Park, Eddie ; Preall, Jonathan B. ; Presaud, Kimberly ; Ribeca, Paolo ; Robyr, Daniel ; Ruan, Xiaoan ; Sammeth, Michael ; Sandhu, Kuljeet Singh ; Schaeffer, Lorain ; See, Lei - Hoon ; Shahab, Atif ; Skancke, Jorgen ; Suzuki, Ana Maria ; Takahashi, Hazuki ; Tilgner, Hagen ; Trout, Diane ; Walters, Nathalie ; Wang, Huaien ; Hayashizaki, Yoshihide ; Reymond, Alexandre ; Antonarakis, Stylianos E. ; Hannon, Gregory J. ; Ruan, Yijun ; Carninci, Piero ; Sloan, Cricket A. ; Learned, Katrina ; Malladi, Venkat S. ; Wong, Matthew C. ; Barber, Galt P. ; Cline, Melissa S. ; Dreszer, Timothy R. ; Heitner, Steven G. ; Karolchik, Donna ; Kirkup, Vanessa M. ; Meyer, Laurence R. ; Long, Jeffrey C. ; Maddren, Morgan ; Raney, Brian J. ; Grasfeder, Linda L. ; Giresi, Paul G. ; Battenhouse, Anna ; Sheffield, Nathan C. ; Showers, Kimberly A. ; London, Darin ; Bhinge, Akshay A. ; Shestak, Christopher ; Schaner, Matthew R. ; Ki Kim, Seul ; Zhang, Zhuzhu Z. ; Mieczkowski, Piotr A. ; Mieczkowska, Joanna O. ; Liu, Zheng ; Mcdaniell, Ryan M. ; Ni, Yunyun ; Rashid, Naim U. ; Kim, Min Jae ; Adar, Sheera ; Zhang, Zhancheng ; Wang, Tianyuan ; Winter, Deborah ; Keefe, Damian ; Iyer, Vishwanath R. ; Zheng, Meizhen ; Wang, Ping ; Gertz, Jason ; Vielmetter, Jost ; Partridge, E. ; Varley, Katherine E. ; Gasper, Clarke ; Bansal, Anita ; Pepke, Shirley ; Jain, Preti ; Amrhein, Henry ; Bowling, Kevin M. ; Anaya, Michael ; Cross, Marie K. ; Muratet, Michael A. ; Newberry, Kimberly M. ; Mccue, Kenneth ; Nesmith, Amy S. ; Fisher - Aylor, Katherine I. ; Pusey, Barbara ; Desalvo, Gilberto ; Parker, Stephanie L. ; Balasubramanian, Sreeram ; Davis, Nicholas S. ; Meadows, Sarah K. ; Eggleston, Tracy ; Newberry, J. Scott ; Levy, Shawn E. ; Absher, Devin M. ; Wong, Wing H. ; Blow, Matthew J. ; Visel, Axel ; Pennachio, Len A. ; Petrykowska, Hanna M. ; Abyzov, Alexej ; Aken, Bronwen ; Barrell, Daniel ; Barson, Gemma;

Nature, Sept 6, 2012, Vol.489(7414), p.57(18) [Peer Reviewed Journal]

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Associations of Plasma Concentrations of Dichlorodiphenyldichloroethylene and Polychlorinated Biphenyls with Prostate Cancer: A Case–Control Study in Guadeloupe (French West Indies)

Emeville, Elise ; Giusti, Arnaud ; Coumoul, Xavier ; Thomé, Jean-Pierre ; Blanchet, Pascal ; Multigner, Luc

Environmental Health Perspectives, 2015, Vol.123(4), p.317-323 [Peer Reviewed Journal]

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Prenatal Exposure to Polycyclic Aromatic Hydrocarbons, Benzo a pyrene–DNA Adducts, and Genomic DNA Methylation in Cord Blood

Herbstman, Julie B ; Tang, Deliang ; Zhu, Deguang ; Qu, Lirong ; Sjödin, Andreas ; Li, Zheng ; Camann, David ; Perera, Frederica P

Environmental Health Perspectives, 2012, Vol.120(5), p.733-738 [Peer Reviewed Journal]

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Long-term Air Pollution Exposure, Genome-wide DNA Methylation and Lung Function in the LifeLines Cohort Study

De F.C. Lichtenfels, Ana Julia ; Van Der Plaat, Diana A ; De Jong, Kim ; Van Diemen, Cleo C ; Postma, Dirkje S ; Nedeljkovic, Ivana ; Van Duijn, Cornelia M ; Amin, Najaf ; La Bastide-Van Gemert, Sacha ; De Vries, Maaike ; Ward-Caviness, Cavin K ; Wolf, Kathrin ; Waldenberger, Melanie ; Peters, Annette ; Stolk, Ronald P ; Brunekreef, Bert ; Boezen, H. Marike ; Vonk, Judith M

Environmental Health Perspectives, 2018, Vol.126(2) [Peer Reviewed Journal]

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Exposure to Brominated Trihalomethanes in Water During Pregnancy and Micronuclei Frequency in Maternal and Cord Blood Lymphocytes

Stayner, Leslie Thomas ; Pedersen, Marie ; Patelarou, Evridiki ; Decordier, Ilse ; Vande Loock, Kim ; Chatzi, Leda ; Espinosa, Ana ; Fthenou, Eleni ; Nieuwenhuijsen, Mark J ; Gracia-Lavedan, Esther ; Stephanou, Euripides G ; Kirsch-Volders, Micheline ; Kogevinas, Manolis

Environmental Health Perspectives, 2014, Vol.122(1), p.100-106 [Peer Reviewed Journal]

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Profiling of the Tox21 Chemical Collection for Mitochondrial Function to Identify Compounds that Acutely Decrease Mitochondrial Membrane Potential

Attene-Ramos, Matias S ; Huang, Ruili ; Michael, Sam ; Witt, Kristine L ; Richard, Ann ; Tice, Raymond R ; Simeonov, Anton ; Austin, Christopher P ; Xia, Menghang

Environmental Health Perspectives, 2015, Vol.123(1), p.49-56 [Peer Reviewed Journal]

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