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1
KekuleScope: prediction of cancer cell line sensitivity and compound potency using convolutional neural networks trained on compound images
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KekuleScope: prediction of cancer cell line sensitivity and compound potency using convolutional neural networks trained on compound images

Cortés-Ciriano, Isidro ; Bender, Andreas

Journal of cheminformatics, 2019-06-19, Vol.11 (1), p.1-16 [Peer Reviewed Journal]

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2
Synthesis and characterization of novel 2-amino-chromene-nitriles that target Bcl-2 in acute myeloid leukemia cell lines
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Synthesis and characterization of novel 2-amino-chromene-nitriles that target Bcl-2 in acute myeloid leukemia cell lines

Keerthy, Hosadurga K ; Garg, Manoj ; Mohan, Chakrabhavi D ; Madan, Vikas ; Kanojia, Deepika ; Shobith, Rangappa ; Nanjundaswamy, Shivananju ; Mason, Daniel J ; Bender, Andreas ; Basappa ; Rangappa, Kanchugarakoppal S ; Koeffler, H Phillip Lodola, Alessio

PloS one, 2014, Vol.9 (9), p.e107118-e107118 [Peer Reviewed Journal]

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3
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Menden, Michael P ; Wang, Dennis ; Mason, Mike J ; Szalai, Bence ; Bulusu, Krishna C ; Guan, Yuanfang ; Yu, Thomas ; Kang, Jaewoo ; Jeon, Minji ; Wolfinger, Russ ; Nguyen, Tin ; Zaslavskiy, Mikhail ; Jang, In Sock ; Ghazoui, Zara ; Ahsen, Mehmet Eren ; Vogel, Robert ; Neto, Elias Chaibub ; Norman, Thea ; Tang, Eric K. Y ; Garnett, Mathew J ; Veroli, Giovanni Y. Di ; Fawell, Stephen ; Stolovitzky, Gustavo ; Guinney, Justin ; Dry, Jonathan R ; Saez-Rodriguez, Julio

Nature communications, 2019-06-17, Vol.10 (1), p.1-17 [Peer Reviewed Journal]

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4
Are phylogenetic trees suitable for chemogenomics analyses of bioactivity data sets: the importance of shared active compounds and choosing a suitable data embedding method, as exemplified on Kinases
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Are phylogenetic trees suitable for chemogenomics analyses of bioactivity data sets: the importance of shared active compounds and choosing a suitable data embedding method, as exemplified on Kinases

Paricharak, Shardul ; Klenka, Tom ; Augustin, Martin ; Patel, Umesh A ; Bender, Andreas

Journal of cheminformatics, 2013-12, Vol.5 (1), p.1-20 [Peer Reviewed Journal]

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5
Concordance analysis of microarray studies identifies representative gene expression changes in Parkinson’s disease: a comparison of 33 human and animal studies
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Concordance analysis of microarray studies identifies representative gene expression changes in Parkinson’s disease: a comparison of 33 human and animal studies

Oerton, Erin ; Bender, Andreas

BMC neurology, 2017-03-23, Vol.17 (1), p.58-58 [Peer Reviewed Journal]

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6
Neighbours of cancer-related proteins have key influence on pathogenesis and could increase the drug target space for anticancer therapies
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Neighbours of cancer-related proteins have key influence on pathogenesis and could increase the drug target space for anticancer therapies

Módos, Dezső ; Bulusu, Krishna C ; Fazekas, Dávid ; Kubisch, János ; Brooks, Johanne ; Marczell, István ; Szabó, Péter M ; Vellai, Tibor ; Csermely, Péter ; Lenti, Katalin ; Bender, Andreas ; Korcsmáros, Tamás

NPJ systems biology and applications, 2017-01-24, Vol.3 (1), p.2-13 [Peer Reviewed Journal]

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7
Trisubstituted-Imidazoles Induce Apoptosis in Human Breast Cancer Cells by Targeting the Oncogenic PI3K/Akt/mTOR Signaling Pathway
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Trisubstituted-Imidazoles Induce Apoptosis in Human Breast Cancer Cells by Targeting the Oncogenic PI3K/Akt/mTOR Signaling Pathway

Mohan, Chakrabhavi Dhananjaya ; Srinivasa, V ; Rangappa, Shobith ; Mervin, Lewis ; Mohan, Surender ; Paricharak, Shardul ; Baday, Sefer ; Li, Feng ; Shanmugam, Muthu K ; Chinnathambi, Arunachalam ; Zayed, M E ; Alharbi, Sulaiman Ali ; Bender, Andreas ; Sethi, Gautam ; Basappa ; Rangappa, Kanchugarakoppal S Quintas, Luis Eduardo M

PloS one, 2016, Vol.11 (4), p.e0153155

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8
QSAR-derived affinity fingerprints (part 2): modeling performance for potency prediction
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QSAR-derived affinity fingerprints (part 2): modeling performance for potency prediction

Cortés-Ciriano, Isidro ; Škuta, Ctibor ; Bender, Andreas ; Svozil, Daniel

Journal of cheminformatics, 2020-06-05, Vol.12 (1), p.1-17 [Peer Reviewed Journal]

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9
Chemogenomics approaches to rationalising compound action of traditional Chinese and Ayurvedic medicines
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Chemogenomics approaches to rationalising compound action of traditional Chinese and Ayurvedic medicines

Fauzi, Fazlin Mohd ; Koutsoukas, Alexios ; Lowe, Rob ; Joshi, Kalpana ; Fan, Tai-Ping ; Bender, Andreas

Journal of cheminformatics, 2013-03, Vol.5 (S1), p.P44-P44 [Peer Reviewed Journal]

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10
Linking Ayurveda and Western medicine by integrative analysis
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Linking Ayurveda and Western medicine by integrative analysis

Fauzi, Fazlin ; Koutsoukas, Alexios ; Lowe, Robert ; Joshi, Kalpana ; Fan, Tai-Ping ; Glen, Robert ; Bender, Andreas

Journal of Ayurveda and Integrative Medicine, 2013-04-01, Vol.4 (2), p.117-119 [Peer Reviewed Journal]

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