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Enterotypes of the human gut microbiome.

Arumugam, Manimozhiyan ; Raes, Jeroen ; Pelletier, Eric ; Le Paslier, Denis ; Yamada, Takuji ; Mende, Daniel R ; Fernandes, Gabriel R ; Tap, Julien ; Bruls, Thomas ; Batto, Jean-Michel ; Bertalan, Marcelo ; Borruel, Natalia ; Casellas, Francesc ; Fernandez, Leyden ; Gautier, Laurent ; Hansen, Torben ; Hattori, Masahira ; Hayashi, Tetsuya ; Kleerebezem, Michiel ; Kurokawa, Ken ; Leclerc, Marion ; Levenez, Florence ; Manichanh, Chaysavanh ; Nielsen, H Bjørn ; Nielsen, Trine ; Pons, Nicolas ; Poulain, Julie ; Qin, Junjie ; Sicheritz-Ponten, Thomas ; Tims, Sebastian ; Torrents, David ; Ugarte, Edgardo ; Zoetendal, Erwin G ; Wang, Jun ; Guarner, Francisco ; Pedersen, Oluf ; de Vos, Willem M ; Brunak, Søren ; Doré, Joel ; Antolín, María ; Artiguenave, François ; Blottiere, Hervé M ; Almeida, Mathieu ; Brechot, Christian ; Cara, Carlos ; Chervaux, Christian ; Cultrone, Antonella ; Delorme, Christine ; Denariaz, Gérard ; Dervyn, Rozenn ; Foerstner, Konrad U ; Friss, Carsten ; van de Guchte, Maarten ; Guedon, Eric ; Haimet, Florence ; Huber, Wolfgang ; van Hylckama-Vlieg, Johan ; Jamet, Alexandre ; Juste, Catherine ; Kaci, Ghalia ; Knol, Jan ; Lakhdari, Omar ; Layec, Severine ; Le Roux, Karine ; Maguin, Emmanuelle ; Mérieux, Alexandre ; Melo Minardi, Raquel ; M'Rini, Christine ; Muller, Jean ; Oozeer, Raish ; Parkhill, Julian ; Renault, Pierre ; Rescigno, Maria ; Sanchez, Nicolas ; Sunagawa, Shinichi ; Torrejon, Antonio ; Turner, Keith ; Vandemeulebrouck, Gaetana ; Varela, Encarna ; Winogradsky, Yohanan ; Zeller, Georg ; Weissenbach, Jean ; Ehrlich, S Dusko ; Bork, Peer ; Arumugam, Manimozhiyan Arumugam, Manimozhiyan (correspondence author) ; Arumugam, Manimozhiyan (record owner)

Nature, May 12, 2011, Vol.473(7346), pp.174-180 [Peer Reviewed Journal]

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Phylogenomics reveals deep molluscan relationships.

Kocot, Kevin M ; Cannon, Johanna T ; Todt, Christiane ; Citarella, Mathew R ; Kohn, Andrea B ; Meyer, Achim ; Santos, Scott R ; Schander, Christoffer ; Moroz, Leonid L ; Lieb, Bernhard ; Halanych, Kenneth M Kocot, Kevin M (correspondence author) ; Kocot, Kevin M (record owner)

Nature, September 4, 2011, Vol.477(7365), pp.452-456 [Peer Reviewed Journal]

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Molecular mechanism of anaerobic ammonium oxidation.

Kartal, Boran ; Maalcke, Wouter J ; de Almeida, Naomi M ; Cirpus, Irina ; Gloerich, Jolein ; Geerts, Wim ; Op Den Camp, Huub J M ; Harhangi, Harry R ; Janssen-Megens, Eva M ; Francoijs, Kees-Jan ; Stunnenberg, Hendrik G ; Keltjens, Jan T ; Jetten, Mike S M ; Strous, Marc Kartal, Boran (correspondence author) ; Kartal, Boran (record owner)

Nature, October 2, 2011, Vol.479(7371), pp.127-130 [Peer Reviewed Journal]

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Human metabolic individuality in biomedical and pharmaceutical research

Karsten Suhre ; So-Youn Shin ; Ann-Kristin Petersen ; Robert P. Mohney ; David Meredith ; Brigitte Wägele ; Elisabeth Altmaier ; Cardiogram ; Panos Deloukas ; Jeanette Erdmann ; Elin Grundberg ; Christopher J. Hammond ; Martin Hrabé De Angelis ; Gabi Kastenmüller ; Anna Köttgen ; Florian Kronenberg ; Massimo Mangino ; Christa Meisinger ; Thomas Meitinger ; Hans-Werner Mewes ; Michael V. Milburn ; Cornelia Prehn ; Johannes Raffler ; Janina S. Ried ; Werner Römisch-Margl ; Nilesh J. Samani ; Kerrin S. Small ; H. -Erich Wichmann ; Guangju Zhai ; Thomas Illig ; Tim D. Spector ; Jerzy Adamski ; Nicole Soranzo ; Christian Gieger

Nature, 2011, Vol.477(7362), p.54 [Peer Reviewed Journal]

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A Framework for Human Microbiome Research

Methé, Barbara A. ; Nelson, Karen E. ; Pop, Mihai ; Creasy, Heather H. ; Giglio, Michelle G. ; Gevers, Dirk ; Petrosino, Joseph F. ; Abubucker, Sahar ; Badger, Jonathan H. ; Chinwalla, Asif T. ; Earl, Ashlee M. ; Fulton, Robert S. ; Hallsworth-Pepin, Kymberlie ; Lobos, Elizabeth A. ; Madupu, Ramana ; Magrini, Vincent ; Mitreva, Makedonka ; Muzny, Donna M. ; Sodergren, Erica J. ; Versalovic, James ; Wollam, Aye M. ; Worley, Kim C. ; Wortman, Jennifer R. ; Zeng, Qiandong ; Aagaard, Kjersti M. ; Abolude, Olukemi O. ; Allen-Vercoe, Emma ; Alm, Eric J. ; Alvarado, Lucia ; Andersen, Gary L. ; Appelbaum, Elizabeth ; Arachchi, Harindra M. ; Armitage, Gary ; Arze, Cesar A. ; Ayvaz, Tulin ; Baker, Carl C. ; Begg, Lisa ; Belachew, Tsegahiwot ; Bhonagiri, Veena ; Bihan, Monika ; Blaser, Martin J. ; Bloom, Toby ; Vivien Bonazzi, J. ; Brooks, Paul ; Buck, Gregory A. ; Buhay, Christian J. ; Busam, Dana A. ; Campbell, Joseph L. ; Canon, Shane R. ; Cantarel, Brandi L. ; Chain, Patrick S. ; Chen, I-Min A. ; Chen, Lei ; Chhibba, Shaila ; Ciulla, Dawn M. ; Clemente, Jose C. ; Clifton, Sandra W. ; Conlan, Sean ; Crabtree, Jonathan ; Cutting, Mary A. ; Davidovics, Noam J. ; Davis, Catherine C. ; Desantis, Todd Z. ; Deal, Carolyn ; Delehaunty, Kimberley D. ; Deych, Elena ; Dooling, David J. ; Dugan, Shannon P. ; Farmer, Candace N. ; Faust, Karoline ; Feldgarden, Michael ; Felix, Victor M. ; Fisher, Sheila ; Fodor, Anthony A. ; Forney, Larry ; Foster, Leslie ; Di Francesco, Valentina ; Friedman, Jonathan ; Friedrich, Dennis C. ; Fronick, Catrina C. ; Fulton, Lucinda L. ; Gao, Hongyu ; Garcia, Nathalia ; Giannoukos, Georgia ; Giblin, Christina ; Giovanni, Maria Y. ; Goll, Johannes ; Gonzalez, Antonio ; Griggs, Allison ; Gujja, Sharvari ; Haas, Brian J. ; Hamilton, Holli A. ; Hepburn, Theresa A. ; Herter, Brandi ; Hoffmann, Diane E. ; Holder, Michael E. ; Howarth, Clinton ; Huse, Susan M. ; Jansson, Janet K. ; Jiang, Huaiyang ; Jordan, Catherine ; Joshi, Vandita ; Katancik, James A. ; Keitel, Wendy A. ; Kelley, Scott T. ; Kells, Cristyn ; Kinder-Haake, Susan ; King, Nicholas B. ; Knight, Rob ; Kong, Heidi H. ; Koren, Omry ; Koren, Sergey ; Kota, Karthik C. ; Kovar, Christie L. ; Kyrpides, Nikos C. ; La Rosa, Patricio S. ; Lewis, Cecil M. ; Lewis, Lora ; Ley, Ruth E. ; Li, Kelvin ; Liolios, Konstantinos ; Lo, Chien-Chi ; Lozupone, Catherine A. ; Lunsford, R. Dwayne ; Madden, Tessa ; Mahurkar, Anup A. ; Mannon, Peter J. ; Mardis, Elaine R. ; Markowitz, Victor M. ; Mavrommatis, Konstantinos ; Mccorrison, Jamison M. ; Mcewen, Jean ; Mcguire, Amy L. ; Mcinnes, Pamela ; Mehta, Teena ; Mihindukulasuriya, Kathie A. ; Minx, Patrick J. ; Newsham, Irene ; Nusbaum, Chad ; O’laughlin, Michelle ; Orvis, Joshua ; Pagani, Ioanna ; Palaniappan, Krishna ; Patel, Shital M. ; Peterson, Jane ; Podar, Mircea ; Pohl, Craig ; Pollard, Katherine S. ; Priest, Margaret E. ; Proctor, Lita M. ; Qin, Xiang ; Raes, Jeroen ; Ravel, Jacques ; Reid, Jeffrey G. ; Rho, Mina ; Rhodes, Rosamond ; Riehle, Kevin P. ; Rivera, Maria C. ; Rodriguez-Mueller, Beltran ; Rogers, Yu-Hui ; Ross, Matthew C. ; Russ, Carsten ; Sanka, Ravi K. ; Pamela Sankar, J. ; Sathirapongsasuti, Fah ; Schloss, Jeffery A. ; Schloss, Patrick D. ; Scholz, Matthew ; Schriml, Lynn ; Schubert, Alyxandria M. ; Segata, Nicola ; Segre, Julia A. ; Shannon, William D. ; Sharp, Richard R. ; Sharpton, Thomas J. ; Shenoy, Narmada ; Sheth, Nihar U. ; Simone, Gina A. ; Singh, Indresh ; Sobel, Jack D. ; Sommer, Daniel D. ; Spicer, Paul ; Sutton, Granger G. ; Tabbaa, Diana G. ; Thiagarajan, Mathangi ; Tomlinson, Chad M. ; Torralba, Manolito ; Treangen, Todd J. ; Truty, Rebecca M. ; Vishnivetskaya, Tatiana A. ; Walker, Jason ; Wang, Zhengyuan ; Ward, Doyle V. ; Warren, Wesley ; Watson, Mark A. ; Wellington, Christopher ; Wetterstrand, Kris A. ; Wilczek-Boney, Katarzyna ; Wu, Yuan Qing ; Wylie, Kristine M. ; Wylie, Todd ; Yandava, Chandri ; Ye, Yuzhen ; Yooseph, Shibu ; Youmans, Bonnie P. ; Zhou, Yanjiao ; Zhu, Yiming ; Zoloth, Laurie ; Birren, Bruce W. ; Gibbs, Richard A. ; Highlander, Sarah K. ; Weinstock, George M. ; White, Owen ; Huttenhower, Curtis ; Fitzgerald, Michael G. ; Martin, John C. ; Young, Sarah K. ; Anderson, Scott ; Chu, Ken ; Dewhirst, Floyd Everett ; Ding, Yan ; Dunne, Wm. Michael ; Durkin, A. Scott ; Edgar, Robert C. ; Erlich, Rachel L. ; Farrell, Ruth M. ; Goldberg, Jonathan M. ; Harris, Emily L. ; Huang, Katherine H. ; Izard, Jacques Georges ; Knights, Dan ; Lee, Sandra L. ; Lemon, Katherine Paige ; Lennon, Niall ; Liu, Bo ; Liu, Yue ; Mcdonald, Daniel ; Miller, Jason R. ; Pearson, Matthew ; Schmidt, Thomas M. ; Smillie, Chris Scott ; Sykes, Sean M. ; Wang, Lu ; White, James R. ; Ye, Liang ; Zhang, Lan ; Zucker, Jeremy Daniel Hofeld ; Wilson, Richard K.

Methé, Barbara A., Karen E. Nelson, Mihai Pop, Heather H. Creasy, Michelle G. Giglio, Curtis Huttenhower, Dirk Gevers, et al. 2012. A framework for human microbiome research. Nature 486(7402): 215-221. [Peer Reviewed Journal]

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The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais, Nuno L ; Irimia, Manuel ; Pan, Qun ; Xiong, Hui Y ; Gueroussov, Serge ; Lee, Leo J ; Slobodeniuc, Valentina ; Kutter, Claudia ; Watt, Stephen ; Colak, Recep ; Kim, Taehyung ; Misquitta-Ali, Christine M ; Wilson, Michael D ; Kim, Philip M ; Odom, Duncan T ; Frey, Brendan J ; Blencowe, Benjamin J Barbosa-Morais, Nuno L (correspondence author) ; Barbosa-Morais, Nuno L (record owner)

Science (New York, N.Y.), December 21, 2012, Vol.338(6114), pp.1587-1593 [Peer Reviewed Journal]

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Ascaris suum draft genome.

Jex, Aaron R ; Liu, Shiping ; Li, Bo ; Young, Neil D ; Hall, Ross S ; Li, Yingrui ; Yang, Linfeng ; Zeng, Na ; Xu, Xun ; Xiong, Zijun ; Chen, Fangyuan ; Wu, Xuan ; Zhang, Guojie ; Fang, Xiaodong ; Kang, Yi ; Anderson, Garry A ; Harris, Todd W ; Campbell, Bronwyn E ; Vlaminck, Johnny ; Wang, Tao ; Cantacessi, Cinzia ; Schwarz, Erich M ; Ranganathan, Shoba ; Geldhof, Peter ; Nejsum, Peter ; Sternberg, Paul W ; Yang, Huanming ; Wang, Jun ; Wang, Jian ; Gasser, Robin B Jex, Aaron R (correspondence author) ; Jex, Aaron R (record owner)

Nature, October 26, 2011, Vol.479(7374), pp.529-533 [Peer Reviewed Journal]

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Ribozyme-catalyzed transcription of an active ribozyme.

Wochner, Aniela ; Attwater, James ; Coulson, Alan ; Holliger, Philipp Wochner, Aniela (correspondence author) ; Wochner, Aniela (record owner)

Science (New York, N.Y.), April 8, 2011, Vol.332(6026), pp.209-212 [Peer Reviewed Journal]

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Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

Merkin, Jason ; Russell, Caitlin ; Chen, Ping ; Burge, Christopher B Merkin, Jason (correspondence author) ; Merkin, Jason (record owner)

Science (New York, N.Y.), December 21, 2012, Vol.338(6114), pp.1593-1599 [Peer Reviewed Journal]

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The ecoresponsive genome of Daphnia pulex.

Colbourne, John K ; Pfrender, Michael E ; Gilbert, Donald ; Thomas, W Kelley ; Tucker, Abraham ; Oakley, Todd H ; Tokishita, Shinichi ; Aerts, Andrea ; Arnold, Georg J ; Basu, Malay Kumar ; Bauer, Darren J ; Cáceres, Carla E ; Carmel, Liran ; Casola, Claudio ; Choi, Jeong-Hyeon ; Detter, John C ; Dong, Qunfeng ; Dusheyko, Serge ; Eads, Brian D ; Fröhlich, Thomas ; Geiler-Samerotte, Kerry A ; Gerlach, Daniel ; Hatcher, Phil ; Jogdeo, Sanjuro ; Krijgsveld, Jeroen ; Kriventseva, Evgenia V ; Kültz, Dietmar ; Laforsch, Christian ; Lindquist, Erika ; Lopez, Jacqueline ; Manak, J Robert ; Muller, Jean ; Pangilinan, Jasmyn ; Patwardhan, Rupali P ; Pitluck, Samuel ; Pritham, Ellen J ; Rechtsteiner, Andreas ; Rho, Mina ; Rogozin, Igor B ; Sakarya, Onur ; Salamov, Asaf ; Schaack, Sarah ; Shapiro, Harris ; Shiga, Yasuhiro ; Skalitzky, Courtney ; Smith, Zachary ; Souvorov, Alexander ; Sung, Way ; Tang, Zuojian ; Tsuchiya, Dai ; Tu, Hank ; Vos, Harmjan ; Wang, Mei ; Wolf, Yuri I ; Yamagata, Hideo ; Yamada, Takuji ; Ye, Yuzhen ; Shaw, Joseph R ; Andrews, Justen ; Crease, Teresa J ; Tang, Haixu ; Lucas, Susan M ; Robertson, Hugh M ; Bork, Peer ; Koonin, Eugene V ; Zdobnov, Evgeny M ; Grigoriev, Igor V ; Lynch, Michael ; Boore, Jeffrey L Colbourne, John K (correspondence author) ; Colbourne, John K (record owner)

Science (New York, N.Y.), February 4, 2011, Vol.331(6017), pp.555-561 [Peer Reviewed Journal]

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