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Genetic modifiers of EGFR dependence in non-small cell lung cancer.

Sharifnia, Tanaz ; Rusu, Victor ; Piccioni, Federica ; Bagul, Mukta ; Imielinski, Marcin ; Cherniack, Andrew D ; Pedamallu, Chandra Sekhar ; Wong, Bang ; Wilson, Frederick H ; Garraway, Levi A ; Altshuler, David ; Golub, Todd R ; Root, David E ; Subramanian, Aravind ; Meyerson, Matthew Sharifnia, Tanaz (correspondence author) ; Sharifnia, Tanaz (record owner)

Proceedings of the National Academy of Sciences of the United States of America, December 30, 2014, Vol.111(52), pp.18661-18666 [Peer Reviewed Journal]

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Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1

Lin , Wenchu ; Cao , Jian ; Liu , Jiayun ; Beshiri , Michael L. ; Fujiwara , Yuko ; Francis , Joshua ; Cherniack , Andrew D. ; Geisen , Christoph ; Blair , Lauren P. ; Zou , Mike R. ; Shen , Xiaohua ; Kawamori , Dan ; Liu , Zongzhi ; Grisanzio , Chiara ; Watanabe , Hideo ; Minamishima , Yoji Andrew ; Zhang , Qing ; Kulkarni , Rohit N. ; Signoretti , Sabina ; Rodig , Scott J. ; Bronson , Roderick T. ; Orkin , Stuart H. ; Tuck , David P. ; Benevolenskaya , Elizaveta V. ; Meyerson , Matthew ; Kaelin , William G. Jr ; Yan , Qin 2011

Proceedings of the National Academy of Sciences of the United States of America, 2011, Vol.108(33), pp.13379-13386 [Peer Reviewed Journal]

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Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers

Zhang, Xiaoyang ; Choi, Peter S. ; Francis, Joshua M. ; Imielinski, Marcin ; Watanabe, Hideo ; Cherniack, Andrew D. ; Meyerson, Matthew

Zhang, Xiaoyang, Peter S. Choi, Joshua M. Francis, Marcin Imielinski, Hideo Watanabe, Andrew D. Cherniack, and Matthew Meyerson. 2016. “Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers.” Nature genetics 48 (2): 176-182. doi:10.1038/ng.3470. http://dx.doi.org/10.1038/ng.3470. [Peer Reviewed Journal]

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BRCA1 ensures genome integrity by eliminating estrogen-induced pathological topoisomerase II-DNA complexes.

Sasanuma, Hiroyuki ; Tsuda, Masataka ; Morimoto, Suguru ; Saha, Liton Kumar ; Rahman, Md Maminur ; Kiyooka, Yusuke ; Fujiike, Haruna ; Cherniack, Andrew D ; Itou, Junji ; Callen Moreu, Elsa ; Toi, Masakazu ; Nakada, Shinichiro ; Tanaka, Hisashi ; Tsutsui, Ken ; Yamada, Shintaro ; Nussenzweig, Andre ; Takeda, Shunichi Sasanuma, Hiroyuki (correspondence author) ; Sasanuma, Hiroyuki (record owner)

Proceedings of the National Academy of Sciences of the United States of America, November 6, 2018, Vol.115(45), pp.E10642-E10651 [Peer Reviewed Journal]

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Abstract 3002: Genome engineering approaches to generate models of chromosome arm-level cancer aneuploidy
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Abstract 3002: Genome engineering approaches to generate models of chromosome arm-level cancer aneuploidy

Taylor, Alison Marie ; Zhang, Xiaoyang ; Shih, Juliann ; Ha, Gavin ; Gao, Galen F. ; Berger, Ashton C. ; Cherniack, Andrew D. ; Beroukhim, Rameen ; Meyerson, Matthew

Cancer Research, 07/01/2018, Vol.78(13 Supplement), pp.3002-3002 [Peer Reviewed Journal]

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Genomic Activation of PPARG Reveals a Candidate Therapeutic Axis in Bladder Cancer.

Goldstein, Jonathan T ; Berger, Ashton C ; Shih, Juliann ; Duke, Fujiko F ; Furst, Laura ; Kwiatkowski, David J ; Cherniack, Andrew D ; Meyerson, Matthew ; Strathdee, Craig A Goldstein, Jonathan T (correspondence author) ; Goldstein, Jonathan T (record owner)

Cancer research, December 15, 2017, Vol.77(24), pp.6987-6998 [Peer Reviewed Journal]

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Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1.

Lin, Wenchu ; Cao, Jian ; Liu, Jiayun ; Beshiri, Michael L ; Fujiwara, Yuko ; Francis, Joshua ; Cherniack, Andrew D ; Geisen, Christoph ; Blair, Lauren P ; Zou, Mike R ; Shen, Xiaohua ; Kawamori, Dan ; Liu, Zongzhi ; Grisanzio, Chiara ; Watanabe, Hideo ; Minamishima, Yoji Andrew ; Zhang, Qing ; Kulkarni, Rohit N ; Signoretti, Sabina ; Rodig Lin, Wenchu (correspondence author) ; Lin, Wenchu (record owner)

Proceedings of the National Academy of Sciences of the United States of America, August 16, 2011, Vol.108(33), pp.13379-13386 [Peer Reviewed Journal]

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Genetic clues can be used to predict whether early-stage cancer will form an invasive tumour.

Greulich, Heidi ; Cherniack, Andrew D Greulich, Heidi (correspondence author) ; Greulich, Heidi (record owner)

Nature, February 2019, Vol.566(7744), pp.336-337 [Peer Reviewed Journal]

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An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Liu, Jianfang ; Lichtenberg, Tara ; Hoadley, Katherine A ; Poisson, Laila M ; Lazar, Alexander J ; Cherniack, Andrew D ; Kovatich, Albert J ; Benz, Christopher C ; Levine, Douglas A ; Lee, Adrian V ; Omberg, Larsson ; Wolf, Denise M ; Shriver, Craig D ; Thorsson, Vesteinn ; Caesar-Johnson, Samantha J ; Demchok, John A ; Felau, Ina ; Kasapi, Melpomeni ; Ferguson, Martin L ; Hutter, Carolyn M ; Sofia, Heidi J ; Tarnuzzer, Roy ; Wang, Zhining ; Yang, Liming ; Zenklusen, Jean C ; Zhang, Jiashan (Julia) ; Chudamani, Sudha ; Liu, Jia ; Lolla, Laxmi ; Naresh, Rashi ; Pihl, Todd ; Sun, Qiang ; Wan, Yunhu ; Wu, Ye ; Cho, Juok ; Defreitas, Timothy ; Frazer, Scott ; Gehlenborg, Nils ; Getz, Gad ; Heiman, David I ; Kim, Jaegil ; Lawrence, Michael S ; Lin, Pei ; Meier, Sam ; Noble, Michael S ; Saksena, Gordon ; Voet, Doug ; Zhang, Hailei ; Bernard, Brady ; Chambwe, Nyasha ; Dhankani, Varsha ; Knijnenburg, Theo ; Kramer, Roger ; Leinonen, Kalle ; Liu, Yuexin ; Miller, Michael ; Reynolds, Sheila ; Shmulevich, Ilya ; Thorsson, Vesteinn ; Zhang, Wei ; Akbani, Rehan ; Broom, Bradley M ; Hegde, Apurva M ; Ju, Zhenlin ; Kanchi, Rupa S ; Korkut, Anil ; Li, Jun ; Liang, Han ; Ling, Shiyun ; Liu, Wenbin ; Lu, Yiling ; Mills, Gordon B ; Ng, Kwok-Shing ; Rao, Arvind ; Ryan, Michael ; Wang, Jing ; Weinstein, John N ; Zhang, Jiexin ; Abeshouse, Adam ; Armenia, Joshua ; Chakravarty, Debyani ; Chatila, Walid K ; de Bruijn, Ino ; Gao, Jianjiong ; Gross, Benjamin E ; Heins, Zachary J ; Kundra, Ritika ; La, Konnor ; Ladanyi, Marc ; Luna, Augustin ; Nissan, Moriah G ; Ochoa, Angelica ; Phillips, Sarah M ; Reznik, Ed ; Sanchez-Vega, Francisco ; Sander, Chris ; Schultz, Nikolaus ; Sheridan, Robert ; Sumer, S. Onur ; Sun, Yichao ; Taylor, Barry S ; Wang, Jioajiao ; Zhang, Hongxin ; Anur, Pavana ; Peto, Myron ; Spellman, Paul ; Benz, Christopher ; Stuart, Joshua M ; Wong, Christopher K ; Yau, Christina ; Hayes, D. Neil ; Parker, Joel S ; Wilkerson, Matthew D ; Ally, Adrian ; Balasundaram, Miruna ; Bowlby, Reanne ; Brooks, Denise ; Carlsen, Rebecca ; Chuah, Eric ; Dhalla, Noreen ; Holt, Robert ; Jones, Steven J.M ; Kasaian, Katayoon ; Lee, Darlene ; Ma, Yussanne ; Marra, Marco A ; Mayo, Michael ; Moore, Richard A ; Mungall, Andrew J ; Mungall, Karen ; Robertson, A. Gordon ; Sadeghi, Sara ; Schein, Jacqueline E ; Sipahimalani, Payal ; Tam, Angela ; Thiessen, Nina ; Tse, Kane ; Wong, Tina ; Berger, Ashton C ; Beroukhim, Rameen ; Cherniack, Andrew D ; Cibulskis, Carrie ; Gabriel, Stacey B ; Gao, Galen F ; Ha, Gavin ; Meyerson, Matthew ; Schumacher, Steven E ; Shih, Juliann ; Kucherlapati, Melanie H ; Kucherlapati, Raju S ; Baylin, Stephen ; Cope, Leslie ; Danilova, Ludmila ; Bootwalla, Moiz S ; Lai, Phillip H ; Maglinte, Dennis T ; Van Den Berg, David J ; Weisenberger, Daniel J ; Auman, J. Todd ; Balu, Saianand ; Bodenheimer, Tom ; Fan, Cheng ; Hoadley, Katherine A ; Hoyle, Alan P ; Jefferys, Stuart R ; Jones, Corbin D ; Meng, Shaowu ; Mieczkowski, Piotr A ; Mose, Lisle E ; Perou, Amy H ; Perou, Charles M ; Roach, Jeffrey ; Shi, Yan ; Simons, Janae V ; Skelly, Tara ; Soloway, Matthew G ; Tan, Donghui ; Veluvolu, Umadevi ; Fan, Huihui ; Hinoue, Toshinori ; Laird, Peter W ; Shen, Hui ; Zhou, Wanding ; Bellair, Michelle ; Chang, Kyle ; Covington, Kyle ; Creighton, Chad J ; Dinh, Huyen ; Doddapaneni, Harshavardhan ; Donehower, Lawrence A ; Drummond, Jennifer ; Gibbs, Richard A ; Glenn, Robert ; Hale, Walker ; Han, Yi ; Hu, Jianhong ; Korchina, Viktoriya ; Lee, Sandra ; Lewis, Lora ; Li, Wei ; Liu, Xiuping ; Morgan, Margaret ; Morton, Donna ; Muzny, Donna ; Santibanez, Jireh ; Sheth, Margi ; Shinbro, Eve ; Wang, Linghua ; Wang, Min ; Wheeler, David A ; Xi, Liu ; Zhao, Fengmei ; Hess, Julian ; Appelbaum, Elizabeth L ; Bailey, Matthew ; Cordes, Matthew G ; Ding, Li ; Fronick, Catrina C ; Fulton, Lucinda A ; Fulton, Robert S ; Kandoth, Cyriac ; Mardis, Elaine R ; Mclellan, Michael D ; Miller, Christopher A ; Schmidt, Heather K ; Wilson, Richard K ; Crain, Daniel ; Curley, Erin ; Gardner, Johanna ; Lau, Kevin ; Mallery, David ; Morris, Scott ; Paulauskis, Joseph ; Penny, Robert ; Shelton, Candace ; Shelton, Troy ; Sherman, Mark ; Thompson, Eric ; Yena, Peggy ; Bowen, Jay ; Gastier-Foster, Julie M ; Gerken, Mark ; Leraas, Kristen M ; Lichtenberg, Tara M ; Ramirez, Nilsa C ; Wise, Lisa ; Zmuda, Erik ; Corcoran, Niall ; Costello, Tony ; Hovens, Christopher

Cell, 05 April 2018, Vol.173(2), pp.400-416.e11 [Peer Reviewed Journal]

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Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

Hoadley, Katherine A ; Yau, Christina ; Hinoue, Toshinori ; Wolf, Denise M ; Lazar, Alexander J ; Drill, Esther ; Shen, Ronglai ; Taylor, Alison M ; Cherniack, Andrew D ; Thorsson, Vésteinn ; Akbani, Rehan ; Bowlby, Reanne ; Wong, Christopher K ; Wiznerowicz, Maciej ; Sanchez-Vega, Francisco ; Robertson, A. Gordon ; Schneider, Barbara G ; Lawrence, Michael S ; Noushmehr, Houtan ; Malta, Tathiane M ; Caesar-Johnson, Samantha J ; Demchok, John A ; Felau, Ina ; Kasapi, Melpomeni ; Ferguson, Martin L ; Hutter, Carolyn M ; Sofia, Heidi J ; Tarnuzzer, Roy ; Wang, Zhining ; Yang, Liming ; Zenklusen, Jean C ; Zhang, Jiashan (Julia) ; Chudamani, Sudha ; Liu, Jia ; Lolla, Laxmi ; Naresh, Rashi ; Pihl, Todd ; Sun, Qiang ; Wan, Yunhu ; Wu, Ye ; Cho, Juok ; Defreitas, Timothy ; Frazer, Scott ; Gehlenborg, Nils ; Getz, Gad ; Heiman, David I ; Kim, Jaegil ; Lawrence, Michael S ; Lin, Pei ; Meier, Sam ; Noble, Michael S ; Saksena, Gordon ; Voet, Doug ; Zhang, Hailei ; Bernard, Brady ; Chambwe, Nyasha ; Dhankani, Varsha ; Knijnenburg, Theo ; Kramer, Roger ; Leinonen, Kalle ; Liu, Yuexin ; Miller, Michael ; Reynolds, Sheila ; Shmulevich, Ilya ; Thorsson, Vesteinn ; Zhang, Wei ; Akbani, Rehan ; Broom, Bradley M ; Hegde, Apurva M ; Ju, Zhenlin ; Kanchi, Rupa S ; Korkut, Anil ; Li, Jun ; Liang, Han ; Ling, Shiyun ; Liu, Wenbin ; Lu, Yiling ; Mills, Gordon B ; Ng, Kwok-Shing ; Rao, Arvind ; Ryan, Michael ; Wang, Jing ; Weinstein, John N ; Zhang, Jiexin ; Abeshouse, Adam ; Armenia, Joshua ; Chakravarty, Debyani ; Chatila, Walid K ; de Bruijn, Ino ; Gao, Jianjiong ; Gross, Benjamin E ; Heins, Zachary J ; Kundra, Ritika ; La, Konnor ; Ladanyi, Marc ; Luna, Augustin ; Nissan, Moriah G ; Ochoa, Angelica ; Phillips, Sarah M ; Reznik, Ed ; Sanchez-Vega, Francisco ; Sander, Chris ; Schultz, Nikolaus ; Sheridan, Robert ; Sumer, S. Onur ; Sun, Yichao ; Taylor, Barry S ; Wang, Jioajiao ; Zhang, Hongxin ; Anur, Pavana ; Peto, Myron ; Spellman, Paul ; Benz, Christopher ; Stuart, Joshua M ; Wong, Christopher K ; Yau, Christina ; Hayes, D. Neil ; Parker, Joel S ; Wilkerson, Matthew D ; Ally, Adrian ; Balasundaram, Miruna ; Bowlby, Reanne ; Brooks, Denise ; Carlsen, Rebecca ; Chuah, Eric ; Dhalla, Noreen ; Holt, Robert ; Jones, Steven J.M ; Kasaian, Katayoon ; Lee, Darlene ; Ma, Yussanne ; Marra, Marco A ; Mayo, Michael ; Moore, Richard A ; Mungall, Andrew J ; Mungall, Karen ; Robertson, A. Gordon ; Sadeghi, Sara ; Schein, Jacqueline E ; Sipahimalani, Payal ; Tam, Angela ; Thiessen, Nina ; Tse, Kane ; Wong, Tina ; Berger, Ashton C ; Beroukhim, Rameen ; Cherniack, Andrew D ; Cibulskis, Carrie ; Gabriel, Stacey B ; Gao, Galen F ; Ha, Gavin ; Meyerson, Matthew ; Schumacher, Steven E ; Shih, Juliann ; Kucherlapati, Melanie H ; Kucherlapati, Raju S ; Baylin, Stephen ; Cope, Leslie ; Danilova, Ludmila ; Bootwalla, Moiz S ; Lai, Phillip H ; Maglinte, Dennis T ; Van Den Berg, David J ; Weisenberger, Daniel J ; Auman, J. Todd ; Balu, Saianand ; Bodenheimer, Tom ; Fan, Cheng ; Hoadley, Katherine A ; Hoyle, Alan P ; Jefferys, Stuart R ; Jones, Corbin D ; Meng, Shaowu ; Mieczkowski, Piotr A ; Mose, Lisle E ; Perou, Amy H ; Perou, Charles M ; Roach, Jeffrey ; Shi, Yan ; Simons, Janae V ; Skelly, Tara ; Soloway, Matthew G ; Tan, Donghui ; Veluvolu, Umadevi ; Fan, Huihui ; Hinoue, Toshinori ; Laird, Peter W ; Shen, Hui ; Zhou, Wanding ; Bellair, Michelle ; Chang, Kyle ; Covington, Kyle ; Creighton, Chad J ; Dinh, Huyen ; Doddapaneni, Harshavardhan ; Donehower, Lawrence A ; Drummond, Jennifer ; Gibbs, Richard A ; Glenn, Robert ; Hale, Walker ; Han, Yi ; Hu, Jianhong ; Korchina, Viktoriya ; Lee, Sandra ; Lewis, Lora ; Li, Wei ; Liu, Xiuping ; Morgan, Margaret ; Morton, Donna ; Muzny, Donna ; Santibanez, Jireh ; Sheth, Margi ; Shinbrot, Eve ; Wang, Linghua ; Wang, Min ; Wheeler, David A ; Xi, Liu ; Zhao, Fengmei ; Hess, Julian ; Appelbaum, Elizabeth L ; Bailey, Matthew ; Cordes, Matthew G ; Ding, Li ; Fronick, Catrina C ; Fulton, Lucinda A ; Fulton, Robert S ; Kandoth, Cyriac ; Mardis, Elaine R ; Mclellan, Michael D ; Miller, Christopher A ; Schmidt, Heather K ; Wilson, Richard K ; Crain, Daniel ; Curley, Erin ; Gardner, Johanna ; Lau, Kevin ; Mallery, David ; Morris, Scott ; Paulauskis, Joseph ; Penny, Robert ; Shelton, Candace ; Shelton, Troy ; Sherman, Mark ; Thompson, Eric ; Yena, Peggy ; Bowen, Jay ; Gastier-Foster, Julie M ; Gerken, Mark ; Leraas, Kristen M ; Lichtenberg, Tara M

Cell, 05 April 2018, Vol.173(2), pp.291-304.e6 [Peer Reviewed Journal]

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