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Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences

Colonna, Vincenza ; Ayub, Qasim ; Chen, Yuan ; Pagani, Luca ; Luisi, Pierre ; Pybus, Marc ; Garrison, Erik ; Xue, Yali ; Tyler-Smith, Chris

Genome Biology, 2014, Vol.15(6), p.R88-R88 [Peer Reviewed Journal]

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A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

Macarthur, Daniel G. ; Balasubramanian, Suganthi ; Frankish, Adam ; Huang, Ni ; Morris, James ; Walter, Klaudia ; Jostins, Luke ; Habegger, Lukas ; Pickrell, Joseph K. ; Montgomery, Stephen B. ; Albers, Cornelis A. ; Zhang, Zhengdong D. ; Conrad, Donald F. ; Lunter, Gerton ; Zheng, Hancheng ; Ayub, Qasim ; Depristo, Mark A. ; Banks, Eric ; Hu, Min ; Handsaker, Robert E. ; Rosenfeld, Jeffrey A. ; Fromer, Menachem ; Jin, Mike ; Mu, Xinmeng Jasmine ; Khurana, Ekta ; Ye, Kai ; Kay, Mike ; Saunders, Gary Ian ; Suner, Marie-Marthe ; Hunt, Toby ; Barnes, H. A. ; Amid, Clara ; Carvalho-Silva, Denise R. ; Bignell, Alexandra H. ; Snow, Catherine ; Yngvadottir, Bryndis ; Bumpstead, Suzannah ; Cooper, David N. ; Xue, Yali ; Romero, Irene Gallego ; Wang, Jun ; Li, Yingrui ; Gibbs, Richard A. ; Mccarroll, Steven A. ; Dermitzakis, Emmanouil T. ; Pritchard, Jonathan K. ; Barrett, Jeffrey C. ; Harrow, Jennifer ; Hurles, Matthew E. ; Gerstein, Mark B. ; Tyler-Smith, Chris

Science, 17 February 2012, Vol.335(6070), pp.823-828 [Peer Reviewed Journal]

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The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.(Report)

Mallick, Swapan ; Li, Heng ; Lipson, Mark ; Mathieson, Iain ; Gymrek, Melissa ; Racimo, Fernando ; Zhao, Mengyao ; Chennagiri, Niru ; Nordenfelt, Susanne ; Tandon, Arti ; Skoglund, Pontus ; Lazaridis, Iosif ; Sankararaman, Sriram ; Fu, Qiaomei ; Rohland, Nadin ; Renaud, Gabriel ; Erlich, Yaniv ; Willems, Thomas ; Gallo, Carla ; Spence, Jeffrey P. ; Song, Yun S. ; Poletti, Giovanni ; Balloux, Francois ; Van Driem, George ; De Knijff, Peter ; Romero, Irene Gallego ; Jha, Aashish R. ; Behar, Doron M. ; Bravi, Claudio M. ; Capelli, Cristian ; Hervig, Tor ; Moreno - Estrada, Andres ; Posukh, Olga L. ; Balanovska, Elena ; Balanovsky, Oleg ; Karachanak - Yankova, Sena ; Sahakyan, Hovhannes ; Toncheva, Draga ; Yepiskoposyan, Levon ; Tyler - Smith, Chris ; Xue, Yali ; Abdullah, M. Syafiq ; Ruiz - Linares, Andres ; Beall, Cynthia M. ; Di Rienzo, Anna ; Jeong, Choongwon ; Starikovskaya, Elena B. ; Metspalu, Ene ; Parik, Jri ; Villems, Richard ; Henn, Brenna M. ; Hodoglugil, Ugur ; Mahley, Robert ; Sajantila, Antti ; Stamatoyannopoulos, George ; Wee, Joseph T. S. ; Khusainova, Rita ; Khusnutdinova, Elza ; Litvinov, Sergey ; Ayodo, George ; Comas, David ; Hammer, Michael F. ; Kivisild, Toomas ; Klitz, William ; Winkler, Cheryl A. ; Labuda, Damian ; Bamshad, Michael ; Jorde, Lynn B. ; Tishkoff, Sarah A. ; Watkins, W. Scott ; Metspalu, Mait ; Dryomov, Stanislav ; Sukernik, Rem ; Singh, Lalji ; Thangaraj, Kumarasamy ; Pbo, Svante ; Kelso, Janet ; Patterson, Nick ; Reich, David

Nature, Oct 13, 2016, Vol.538(7624), p.201 [Peer Reviewed Journal]

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A genomic history of Aboriginal Australia.(Report)

Malaspinas, Anna-Sapfo ; Westaway, Michael C. ; Muller, Craig ; Sousa, Vitor C. ; Lao, Oscar ; Alves, Isabel ; Bergstrm, Anders ; Athanasiadis, Georgios ; Cheng, Jade Y. ; Crawford, Jacob E. ; Heupink, Tim H. ; Macholdt, Enrico ; Peischl, Stephan ; Rasmussen, Simon ; Schiffels, Stephan ; Subramanian, Sankar ; Wright, Joanne L. ; Albrechtsen, Anders ; Barbieri, Chiara ; Dupanloup, Isabelle ; Eriksson, Anders ; Margaryan, Ashot ; Moltke, Ida ; Pugach, Irina ; Korneliussen, Thorfinn S. ; Levkivskyi, Ivan P. ; Moreno-Mayar, J. Vctor ; Ni, Shengyu ; Racimo, Fernando ; Sikora, Martin ; Xue, Yali ; Aghakhanian, Farhang A. ; Brucato, Nicolas ; Brunak, Sren ; Campos, Paula F. ; Clark, Warren ; Ellingvg, Sturla ; Fourmile, Gudjugudju ; Gerbault, Pascale ; Injie, Darren ; Koki, George ; Leavesley, Matthew ; Logan, Betty ; Lynch, Aubrey ; Matisoo-Smith, Elizabeth A. ; Mcallister, Peter J. ; Mentzer, Alexander J. ; Metspalu, Mait ; Migliano, Andrea B. ; Murgha, Les ; Phipps, Maude E. ; Pomat, William ; Reynolds, Doc ; Ricaut, Francois-Xavier ; Siba, Peter ; Thomas, Mark G. ; Wales, Thomas ; Wall, Colleen Marun ; Oppenheimer, Stephen J. ; Tyler-Smith, Chris ; Durbin, Richard ; Dortch, Joe ; Manica, Andrea ; Schierup, Mikkel H. ; Foley, Robert A. ; Lahr, Marta Mirazn ; Bowern, Claire ; Wall, Jeffrey D. ; Mailund, Thomas ; Stoneking, Mark ; Nielsen, Rasmus ; Sandhu, Manjinder S. ; Excoffier, Laurent ; Lambert, David M. ; Willerslev, Eske

Nature, Oct 13, 2016, Vol.538(7624), p.207 [Peer Reviewed Journal]

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A neolithic expansion, but strong genetic structure, in the independent history of New Guinea.(HUMAN GENETICS)(Report)(Author abstract)

Bergstrom, Anders ; Oppenheimer, Stephen J. ; Mentzer, Alexander J. ; Auckland, Kathryn ; Robson, Kathryn ; Attenborough, Robert ; Alpers, Michael P. ; Koki, George ; Pomat, William ; Siba, Peter ; Xue, Yali ; Sandhu, Manjinder S. ; Tyler - Smith, Chris

Science, Sept 15, 2017, Vol.357(6356), p.1160(4) [Peer Reviewed Journal]

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Genes Regulated by Vitamin D in Bone Cells Are Positively Selected in East Asians

Arciero, Elena ; Biagini, Simone Andrea ; Chen, Yuan ; Xue, Yali ; Luiselli, Donata ; Tyler-Smith, Chris ; Pagani, Luca ; Ayub, Qasim Palsson, Arnar (editor)

PLoS ONE, 2015, Vol.10(12) [Peer Reviewed Journal]

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Mutations disrupting the Kennedy phosphatidylcholine pathway in humans with congenital lipodystrophy and fatty liver disease.(MEDICAL SCIENCES)(Author abstract)

Payne, Felicity ; Lim, Koini ; Girousse, Amandine ; Brown, Rebecca J. ; Kory, Nora ; Robbins, Ann ; Xue, Yali ; Sleigh, Alison ; Cochran, Elaine ; Adams, Claire ; Borman, Arundhati Dev ; Russel - Jones, David ; Gorden, Phillip ; Semple, Robert K. ; Saudek, Vladimir ; O'Rahilly, Stephen ; Walther, Tobias C. ; Barroso, Ines ; Savage, David B.

Proceedings of the National Academy of Sciences of the United States, June 17, 2014, Vol.111(24), p.8902(5) [Peer Reviewed Journal]

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A Genome-Wide Survey of Genetic Variation in Gorillas Using Reduced Representation Sequencing.(Research Article)

Scally, Aylwyn ; Yngvadottir, Bryndis ; Xue, Yali ; Ayub, Qasim ; Durbin, Richard ; Tyler - Smith, Chris

PLoS ONE, June 4, 2013, Vol.8(6), p.e65066 [Peer Reviewed Journal]

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Genetic basis of Y-linked hearing impairment.(Report)

Qiuju Wang ; Yali Xue ; Yujun Zhang ; Quan Long ; Fengtang Yang ; Turner, Daniel J. ; Fitzgerald, Tomas ; Bee Ling Ng ; Yali Zhao ; Yuan Chen ; Qingjie Liu ; Weiyan Yang ; Dongyi Han ; Quail, Michael A. ; Swerdlow, Harold ; Burton, John ; Fahey, Ciara ; Zemin Ning ; Hurles, Matthew E. ; Carter, Nigel P. ; Huanming Yang ; Tyler - Smith, Chris

American Journal of Human Genetics, Feb 7, 2013, Vol.92(2), p.301(6) [Peer Reviewed Journal]

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Health and population effects of rare gene knockouts in adult humans with related parents.(HUMAN GENOMICS)(Author abstract)

Narasimhan, Vagheesh M ; Hunt, Karen A ; Mason, Dan ; Baker, Christopher L ; Karczewski, Konrad J ; Barnes, Michael R ; Barnett, Anthony H ; Bates, Chris ; Bellary, Srikanth ; Bockett, Nicholas A ; Giorda, Kristina ; Griffiths, Christopher J ; Hemingway, Harry ; Jia, Zhilong ; Kelly, M Ann ; Khawaja, Hajrah A ; Lek, Monkol ; Mccarthy, Shane ; Mceachan, Rosie ; O'Donnell-Luria, Anne ; Paigen, Kenneth ; Parisinos, Constantinos A ; Sheridan, Eamonn ; Southgate, Laura ; Tee, Louise ; Thomas, Mark ; Xue, Yali ; Schnall-Levin, Michael ; Petkov, Petko M ; Tyler-Smith, Chris ; Maher, Eamonn R ; Trembath, Richard C ; Macarthur, Daniel G ; Wright, John ; Durbin, Richard ; Van Heel, David A;

Science, April 22, 2016, Vol.352(6284), p.474(4) [Peer Reviewed Journal]

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