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1
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
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Article
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MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model

Le Béchec, Antony ; Portales-Casamar, Elodie ; Vetter, Guillaume ; Moes, Michèle ; Zindy, Pierre-Joachim ; Saumet, Anne ; Arenillas, David ; Theillet, Charles ; Wasserman, Wyeth W ; Lecellier, Charles-Henri ; Friederich, Evelyne

BMC bioinformatics, 2011-03-04, Vol.12 (1), p.67-67 [Peer Reviewed Journal]

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2
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
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Article
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JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Khan, Aziz ; Fornes, Oriol ; Stigliani, Arnaud ; Gheorghe, Marius ; Castro-Mondragon, Jaime A ; van der Lee, Robin ; Bessy, Adrien ; Chèneby, Jeanne ; Kulkarni, Shubhada R ; Tan, Ge ; Baranasic, Damir ; Arenillas, David J ; Sandelin, Albin ; Vandepoele, Klaas ; Lenhard, Boris ; Ballester, Benoît ; Wasserman, Wyeth W ; Parcy, François ; Mathelier, Anthony

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D1284-D1284 [Peer Reviewed Journal]

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In Silico Detection of Sequence Variations Modifying Transcriptional Regulation
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Article
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In Silico Detection of Sequence Variations Modifying Transcriptional Regulation

Andersen, Malin C ; Engström, Pär G ; Lithwick, Stuart ; Arenillas, David ; Eriksson, Per ; Lenhard, Boris ; Wasserman, Wyeth W ; Odeberg, Jacob Stormo, Gary

PLoS computational biology, 2008, Vol.4 (1), p.e5-e5 [Peer Reviewed Journal]

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4
A regulatory toolbox of MiniPromoters to drive selective expression in the brain
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Article
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A regulatory toolbox of MiniPromoters to drive selective expression in the brain

Elodie Portales-Casamar ; Douglas J. Swanson ; Li Liu ; Charles N. de Leeuw ; Kathleen G. Banks ; Shannan J. Ho Sui ; Debra L. Fulton ; Johar Ali ; Mahsa Amirabbasi ; David J. Arenillas ; Nazar Babyak ; Sonia F. Black ; Russell J. Bonaguro ; Erich Brauer ; Tara R. Candido ; Mauro Castellarin ; Jing Chen ; Ying Chen ; Jason C. Y. Cheng ; Vik Chopra ; T. Roderick Docking ; Lisa Dreolini ; Cletus A. D'Souza ; Erin K. Flynn ; Randy Glenn ; Kristi Hatakka ; Taryn G. Hearty ; Behzad Imanian ; Steven Jiang ; Shadi Khorasan-zadeh ; Ivana Komljenovic ; Stéphanie Laprise ; Nancy Y. Liao ; Jonathan S. Lim ; Stuart Lithwick ; Flora Liu ; Jun Liu ; Meifen Lu ; Melissa McConechy ; Andrea J. McLeod ; Marko Milisavljevic ; Jacek Mis ; Katie O'Connor ; Betty Palma ; Diana L. Palmquist ; Jean-François Schmouth ; Magdalena I. Swanson ; Bonny Tam ; Amy Ticoll ; Jenna L. Turner ; Richard Varhol ; Jenny Vermeulen ; Russell F. Watkins ; Gary Wilson ; Bibiana K. Y. Wong ; Siaw H. Wong ; Tony Y. T. Wong ; George S. Yang ; Athena R. Ypsilanti ; Steven J. M. Jones ; Robert A. Holt ; Daniel Goldowitz ; Wyeth W. Wasserman ; Elizabeth M. Simpson

Proceedings of the National Academy of Sciences - PNAS, 2010-08-31, Vol.107 (38), p.16589-16594 [Peer Reviewed Journal]

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5
Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas
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Article
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Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

Mathelier, Anthony ; Lefebvre, Calvin ; Zhang, Allen W ; Arenillas, David J ; Ding, Jiarui ; Wasserman, Wyeth W ; Shah, Sohrab P

GenomeBiology.com, 2015-04-23, Vol.16 (1), p.84-84 [Peer Reviewed Journal]

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6
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
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Article
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oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

Ho Sui, S. J

Nucleic acids research, 2005-06-02, Vol.33 (10), p.3154-3164 [Peer Reviewed Journal]

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7
Disseny i desenvolupament de la botiga online del Celler d'en Marc
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Dissertation
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Disseny i desenvolupament de la botiga online del Celler d'en Marc

Casellas Cubiña, Joan 2019

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8
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences
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Article
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The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences

Portales-Casamar, Elodie ; Arenillas, David ; Lim, Jonathan ; Swanson, Magdalena I ; Jiang, Steven ; McCallum, Anthony ; Kirov, Stefan ; Wasserman, Wyeth W

Nucleic acids research, 2009-01, Vol.37 (suppl_1), p.D54-D60 [Peer Reviewed Journal]

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9
PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina
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Article
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PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

Hickmott, Jack W ; Chen, Chih-Yu ; Arenillas, David J ; Korecki, Andrea J ; Lam, Siu Ling ; Molday, Laurie L ; Bonaguro, Russell J ; Zhou, Michelle ; Chou, Alice Y ; Mathelier, Anthony ; Boye, Sanford L ; Hauswirth, William W ; Molday, Robert S ; Wasserman, Wyeth W ; Simpson, Elizabeth M

Molecular therapy. Methods & clinical development, 2016, Vol.3 (C), p.16051-16051 [Peer Reviewed Journal]

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10
Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers
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Article
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Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers

Kwon, Andrew T ; Chou, Alice Yi ; Arenillas, David J ; Wasserman, Wyeth W Ponting, Chris P

PLoS computational biology, 2011-12, Vol.7 (12), p.e1002256-e1002256

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