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1
Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
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Article
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Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome

Li, Cai ; Lenhard, Boris ; Luscombe, Nicholas M

Genome research, 2018-05, Vol.28 (5), p.676-688 [Peer Reviewed Journal]

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2
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
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Mammalian RNA polymerase II core promoters: insights from genome-wide studies

Sandelin, Albin ; Carninci, Piero ; Lenhard, Boris ; Ponjavic, Jasmina ; Hayashizaki, Yoshihide ; Hume, David A

Nature reviews. Genetics, 2007-05-08, Vol.8 (6), p.424-436 [Peer Reviewed Journal]

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3
HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers
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HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers

Stadhouders, Ralph ; Aktuna, Suleyman ; Thongjuea, Supat ; Aghajanirefah, Ali ; Pourfarzad, Farzin ; van IJcken, Wilfred ; Lenhard, Boris ; Rooks, Helen ; Best, Steve ; Menzel, Stephan ; Grosveld, Frank ; Thein, Swee Lay ; Soler, Eric

The Journal of clinical investigation, 2014-03-10, Vol.124 (4), p.1699-1710 [Peer Reviewed Journal]

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4
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Bryne, Jan Christian ; Valen, Eivind ; Tang, Man-Hung Eric ; Marstrand, Troels ; Winther, Ole ; da Piedade, Isabelle ; Krogh, Anders ; Lenhard, Boris ; Sandelin, Albin

Nucleic acids research, 2008-01, Vol.36 (suppl_1), p.D102-D106 [Peer Reviewed Journal]

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5
Amphioxus functional genomics and the origins of vertebrate gene regulation
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Amphioxus functional genomics and the origins of vertebrate gene regulation

Marlétaz, Ferdinand ; Firbas, Panos N ; Maeso, Ignacio ; Tena, Juan J ; Bogdanovic, Ozren ; Perry, Malcolm ; Wyatt, Christopher D R ; de la Calle-Mustienes, Elisa ; Bertrand, Stephanie ; Burguera, Demian ; Acemel, Rafael D ; van Heeringen, Simon J ; Naranjo, Silvia ; Herrera-Ubeda, Carlos ; Skvortsova, Ksenia ; Jimenez-Gancedo, Sandra ; Aldea, Daniel ; Marquez, Yamile ; Buono, Lorena ; Kozmikova, Iryna ; Permanyer, Jon ; Louis, Alexandra ; Albuixech-Crespo, Beatriz ; Le Petillon, Yann ; Leon, Anthony ; Subirana, Lucie ; Balwierz, Piotr J ; Duckett, Paul Edward ; Farahani, Ensieh ; Aury, Jean-Marc ; Mangenot, Sophie ; Wincker, Patrick ; Albalat, Ricard ; Benito-Gutiérrez, Èlia ; Cañestro, Cristian ; Castro, Filipe ; D'Aniello, Salvatore ; Ferrier, David E K ; Huang, Shengfeng ; Laudet, Vincent ; Marais, Gabriel A B ; Pontarotti, Pierre ; Schubert, Michael ; Seitz, Hervé ; Somorjai, Ildiko ; Takahashi, Tokiharu ; Mirabeau, Olivier ; Xu, Anlong ; Yu, Jr-Kai ; Carninci, Piero ; Martinez-Morales, Juan Ramon ; Crollius, Hugues Roest ; Kozmik, Zbynek ; Weirauch, Matthew T ; Garcia-Fernàndez, Jordi ; Lister, Ryan ; Lenhard, Boris ; Holland, Peter W H ; Escriva, Hector ; Gómez-Skarmeta, Jose Luis ; Irimia, Manuel

Nature (London), 2018-12, Vol.564 (7734), p.64-70 [Peer Reviewed Journal]

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6
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
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Metazoan promoters: emerging characteristics and insights into transcriptional regulation

Lenhard, Boris ; Sandelin, Albin ; Carninci, Piero

Nature reviews. Genetics, 2012-03-06, Vol.13 (4), p.233-245 [Peer Reviewed Journal]

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7
Two independent transcription initiation codes overlap on vertebrate core promoters
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Two independent transcription initiation codes overlap on vertebrate core promoters

Haberle, Vanja ; Li, Nan ; Hadzhiev, Yavor ; Plessy, Charles ; Previti, Christopher ; Nepal, Chirag ; Gehrig, Paola A ; Dong, Xianjun ; Akalin, Altuna ; Suzuki, Ana Maria ; IJcken, Wilfred ; Armant, Olivier ; Ferg, Marco ; Strähle, Uwe ; Carninci, Piero ; Müller, Ferenc ; Lenhard, Boris

Nature (London), 2014-01-01, Vol.507 (7492), p.381-385 [Peer Reviewed Journal]

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8
SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA
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SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA

Cvetesic, Nevena ; Leitch, Harry G ; Borkowska, Malgorzata ; Müller, Ferenc ; Carninci, Piero ; Hajkova, Petra ; Lenhard, Boris

Genome research, 2018-12, Vol.28 (12), p.1943-1956 [Peer Reviewed Journal]

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9
Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate
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Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Denoeud, F ; Henriet, S ; Mungpakdee, S ; Aury, J.-M ; Da Silva, C ; Brinkmann, H ; Mikhaleva, J ; Olsen, L. C ; Jubin, C ; Canestro, C ; Bouquet, J.-M ; Danks, G ; Poulain, J ; Campsteijn, C ; Adamski, M ; Cross, I ; Yadetie, F ; Muffato, M ; Louis, A ; Butcher, S ; Tsagkogeorga, G ; Konrad, A ; Singh, S ; Jensen, M. F ; Cong, E. H ; Eikeseth-Otteraa, H ; Noel, B ; Anthouard, V ; Porcel, B. M ; Kachouri-Lafond, R ; Nishino, A ; Ugolini, M ; Chourrout, P ; Nishida, H ; Aasland, R ; Huzurbazar, S ; Westhof, E ; Delsuc, F ; Lehrach, H ; Reinhardt, R ; Weissenbach, J ; Roy, S. W ; Artiguenave, F ; Postlethwait, J. H ; Manak, J. R ; Thompson, E. M ; Jaillon, O ; Du Pasquier, L ; Boudinot, P ; Liberles, D. A ; Volff, J.-N ; Philippe, H ; Lenhard, B ; Crollius, H. R ; Wincker, P ; Chourrout, D

Science (American Association for the Advancement of Science), 2010-11-18, Vol.330 (6009), p.1381-1385 [Peer Reviewed Journal]

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10
Control of developmentally primed erythroid genes by combinatorial co-repressor actions
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Control of developmentally primed erythroid genes by combinatorial co-repressor actions

Stadhouders, Ralph ; Cico, Alba ; Stephen, Tharshana ; Thongjuea, Supat ; Kolovos, Petros ; Baymaz, H. Irem ; Yu, Xiao ; Demmers, Jeroen ; Bezstarosti, Karel ; Maas, Alex ; Barroca, V ; Kockx, Christel ; Ozgur, Zeliha ; IJcken, Wilfred ; Arcangeli, Marie-Laure ; Anieu-Soler, Charlotte ; Lenhard, Boris ; Grosveld, Frank ; Soler, Eric

Nature communications, 2015-11-23, Vol.6 (1), p.8893-8893 [Peer Reviewed Journal]

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