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Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource

Nanan, Kyster K ; Ocheltree, Cody ; Sturgill, David ; Mandler, Mariana D ; Prigge, Maria ; Varma, Garima ; Oberdoerffer, Shalini

Nucleic acids research, 15 December 2017, Vol.45(22), pp.12780-12797 [Peer Reviewed Journal]

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Abstract 1302: Effect of intestinal-specific Kaiso overexpression on the APC MIN/+ mouse colon cancer model
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Abstract 1302: Effect of intestinal-specific Kaiso overexpression on the APC MIN/+ mouse colon cancer model

Wojtal, Daria ; Chaudhary, Roopali ; Nanan, Kyster K. ; Morone, Simona ; Daniel, Juliet M.

Cancer Research, 04/15/2012, Vol.72(8 Supplement), pp.1302-1302 [Peer Reviewed Journal]

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Abstract LB-147: Characterization of a Kaiso overexpressing transgenic mouse model
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Abstract LB-147: Characterization of a Kaiso overexpressing transgenic mouse model

Chaudhary, Roopali ; Nanan, Kyster K. ; Daniel, Juliet M.

Cancer Research, 04/15/2010, Vol.70(8 Supplement), pp.LB-147-LB-147 [Peer Reviewed Journal]

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TET‐catalyzed oxidation of intragenic 5‐methylcytosine regulates CTCF‐dependent alternative splicing

Marina, Ryan J ; Sturgill, David ; Bailly, Marc A ; Thenoz, Morgan ; Varma, Garima ; Prigge, Maria F ; Nanan, Kyster K ; Shukla, Sanjeev ; Haque, Nazmul ; Oberdoerffer, Shalini

EMBO Journal, 01 February 2016, Vol.35(3), pp.335-355 [Peer Reviewed Journal]

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Acetylation of Cytidine in mRNA Promotes Translation Efficiency

Arango, Daniel ; Sturgill, David ; Alhusaini, Najwa ; Dillman, Allissa A ; Sweet, Thomas J ; Hanson, Gavin ; Hosogane, Masaki ; Sinclair, Wilson R ; Nanan, Kyster K ; Mandler, Mariana D ; Fox, Stephen D ; Zengeya, Thomas T ; Andresson, Thorkell ; Meier, Jordan L ; Coller, Jeffery ; Oberdoerffer, Shalini

Cell, 13 December 2018, Vol.175(7), pp.1872-1886.e24 [Peer Reviewed Journal]

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TET-Catalyzed 5-Carboxylcytosine Promotes CTCF Binding to Suboptimal Sequences Genome-wide

Nanan, Kyster K ; Sturgill, David M ; Prigge, Maria F ; Thenoz, Morgan ; Dillman, Allissa A ; Mandler, Mariana D ; Oberdoerffer, Shalini

iScience, 27 September 2019, Vol.19, pp.326-339 [Peer Reviewed Journal]

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The transcription factor encyclopedia.(Software)

Yusuf, Dimas ; Butland, Stefanie L. ; Swanson, Magdalena I. ; Bolotin, Eugene ; Ticoll, Amy ; Cheung, Warren A. ; Cindy Zhang, Xiao Yu ; Dickman, Christopher Td. ; Fulton, Debra L. ; Lim, Jonathan S. ; Schnabl, Jake M. ; Ramos, Oscar Hp. ; Vasseur - Cognet, Mireille ; De Leeuw, Charles N. ; Simpson, Elizabeth M. ; Ryffel, Gerhart U. ; Lam, Eric W - F. ; Kist, Ralf ; Wilson, Miranda Sc. ; Marco - Ferreres, Raquel ; Brosens, Jan J. ; Beccari, Leonardo L. ; Bovolenta, Paola ; Benayoun, Berenice A. ; Monteiro, Lara J. ; Schwenen, Helma Dc. ; Grontved, Lars ; Wederell, Elizabeth ; Mandrup, Susanne ; Veitia, Reiner A. ; Chakravarthy, Harini ; Hoodless, Pamela A. ; Mancarelli, M Michela ; Torbett, Bruce E. ; Banham, Alison H. ; Reddy, Sekhar P. ; Cullum, Rebecca L. ; Liedtke, Michaela ; Tschan, Mario P. ; Vaz, Michelle ; Rizzino, Angie ; Zannini, Mariastella ; Frietze, Seth ; Farnham, Peggy J. ; Eijkelenboom, Astrid ; Brown, Philip J. ; Laperriere, David ; Leprince, Dominique ; De Cristofaro, Tiziana ; Prince, Kelly L. ; Putker, Marrit ; Del Peso, Luis ; Camenisch, Gieri ; Wenger, Roland H. ; Mikula, Michal ; Rozendaal, Marieke ; Mader, Sylvie ; Ostrowski, Jerzy ; Rhodes, Simon J. ; Van Rechem, Capucine ; Boulay, Gaylor ; Olechnowicz, Sam Wz. ; Breslin, Mary B. ; Lan, Michael S. ; Nanan, Kyster K. ; Wegner, Michael ; Hou, Juan ; Mullen, Rachel D. ; Colvin, Stephanie C. ; Noy, Peter John ; Webb, Carol F. ; Witek, Matthew E. ; Ferrell, Scott ; Daniel, Juliet M. ; Park, Jason ; Waldman, Scott A. ; Peet, Daniel J. ; Taggart, Michael ; Jayaraman, Padma - Sheela ; Karrich, Julien J. ; Blom, Bianca ; Vesuna, Farhad ; O'geen, Henriette ; Sun, Yunfu ; Gronostajski, Richard M. ; Woodcroft, Mark W. ; Hough, Margaret R. ; Chen, Edwin ; Europe - Finner, G Nicholas ; Karolczak - Bayatti, Magdalena ; Bailey, Jarrod ; Hankinson, Oliver ; Raman, Venu ; Lebrun, David P. ; Biswal, Shyam ; Harvey, Christopher J. ; Debruyne, Jason P. ; Hogenesch, John B. ; Hevner, Robert F. ; Heligon, Christophe ; Luo, Xin M. ; Blank, Marissa Cathleen ; Millen, Kathleen Joyce ; Sharlin, David S. ; Forrest, Douglas ; Dahlman - Wright, Karin ; Zhao, Chunyan ; Mishima, Yuriko ; Sinha, Satrajit ; Chakrabarti, Rumela ; Portales - Casamar, Elodie ; Sladek, Frances M. ; Bradley, Philip H. ; Wasserman, Wyeth W.

Genome Biology (Online Edition), March 29, 2012, Vol.13, p.R24 [Peer Reviewed Journal]

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The Transcription Factor Encyclopedia

Yusuf, Dimas ; Butland, Stefanie L ; Swanson, Magdalena I ; Bolotin, Eugene ; Ticoll, Amy ; Cheung, Warren A ; Cindy Zhang, Xiao Yu ; Dickman, Christopher Td ; Fulton, Debra L ; Schnabl, Jake M ; Ramos, Oscar Hp ; Vasseur-Cognet, Mireille ; De Leeuw, Charles N ; Ryffel, Gerhart U ; Lam, Eric W-F ; Kist, Ralf ; Wilson, Miranda Sc ; Marco-Ferreres, Raquel ; Brosens, Jan J ; Beccari, Leonardo L ; Bovolenta, Paola ; Benayoun, Bérénice A ; Monteiro, Lara J ; Schwenen, Helma Dc ; Grontved, Lars ; Wederell, Elizabeth ; Mandrup, Susanne ; Veitia, Reiner A ; Chakravarthy, Harini ; Hoodless, Pamela A ; Mancarelli, M Michela ; Torbett, Bruce E ; Banham, Alison H ; Reddy, Sekhar P ; Cullum, Rebecca L ; Liedtke, Michaela ; Tschan, Mario P ; Vaz, Michelle ; Rizzino, Angie ; Zannini, Mariastella ; Frietze, Seth ; Farnham, Peggy J ; Eijkelenboom, Astrid ; Brown, Philip J ; Laperrière, David ; Leprince, Dominique ; De Cristofaro, Tiziana ; Prince, Kelly L ; Putker, Marrit ; Del Peso, Luis ; Camenisch, Gieri ; Wenger, Roland H ; Mikula, Michal ; Rozendaal, Marieke ; Mader, Sylvie ; Ostrowski, Jerzy ; Rhodes, Simon J ; Olechnowicz, Sam Wz ; Breslin, Mary B ; Lan, Michael S ; Nanan, Kyster K ; Wegner, Michael ; Hou, Juan ; Mullen, Rachel D ; Colvin, Stephanie C ; Noy, Peter John ; Webb, Carol F ; Witek, Matthew E ; Ferrell, Scott ; Daniel, Juliet M ; Waldman, Scott A ; Peet, Daniel J ; Taggart, Michael ; Jayaraman, Padma-Sheela ; Karrich, Julien J ; Blom, Bianca ; Vesuna, Farhad ; O'Geen, Henriette ; Sun, Yunfu ; Gronostajski, Richard M ; Woodcroft, Mark W ; Hough, Margaret R ; Chen, Edwin ; Europe-Finner, G Nicholas ; Karolczak-Bayatti, Magdalena ; Bailey, Jarrod ; Hankinson, Oliver ; Raman, Venu ; Lebrun, David P ; Biswal, Shyam ; Debruyne, Jason P ; Hogenesch, John B ; Hevner, Robert F ; Héligon, Christophe ; Luo, Xin M ; Blank, Marissa Cathleen ; Millen, Kathleen Joyce ; Sharlin, David S ; Forrest, Douglas ; Dahlman-Wright, Karin ; Zhao, Chunyan ; Mishima, Yuriko ; Sinha, Satrajit ; Chakrabarti, Rumela ; Portales-Casamar, Elodie ; Sladek, Frances M ; Bradley, Philip H ; Wasserman, Wyeth W ; Van Rechem, Capucine ; Boulay, Gaylor ; Simpson, Elizabeth M ; Lim, Jonathan S ; Park, Jason ; Harvey, Christopher J

Yusuf, Dimas, Stefanie L. Butland, Magdalena I. Swanson, Eugene Bolotin, Amy Ticoll, Warren A. Cheung, Xiao Yu Cindy Zhang et al. 2012. The Transcription Factor Encyclopedia. Genome Biology 13(3): R24. [Peer Reviewed Journal]

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The Transcription Factor Encyclopedia

Yusuf, Dimas Butland, Stefanie L. Swanson, Magdalena I. Bolotin, Eugene Ticoll, Amy Cheung, Warren A. Cindy Zhang, Xiao Y. Dickman, Christopher T. D. Fulton, Debra L. Lim, Jonathan S. Schnabl, Jake M. Luo, Xin M. Blank, Marissa C. Millen, Kathleen J. Sharlin, David S. Forrest, Douglas Dahlman-Wright, Karin Zhao, Chunyan Mishima, Yuriko Sinha, Satrajit Chakrabarti, Rumela Ramos, Oscar H. P. Portales-Casamar, Elodie Sladek, Frances M. Bradley, Philip H. Wasserman, Wyeth W. Vasseur-Cognet, Mireille de Leeuw, Charles N. Simpson, Elizabeth M. Ryffel, Gerhart U. Lam, Eric W.-F. Kist, Ralf Wilson, Miranda S. C. Marco-Ferreres, Raquel Brosens, Jan J. Beccari, Leonardo L. Bovolenta, Paola Benayoun, Bérénice A. Monteiro, Lara J. Schwenen, Helma D. C. Grontved, Lars Wederell, Elizabeth Mandrup, Susanne Veitia, Reiner A. Chakravarthy, Harini Hoodless, Pamela A. Mancarelli, M. Michela Torbett, Bruce E. Banham, Alison H. Reddy, Sekhar P. Cullum, Rebecca L. Liedtke, Michaela Tschan, Mario P. Vaz, Michelle Rizzino, Angie Zannini, Mariastella Frietze, Seth Farnham, Peggy J. Eijkelenboom, Astrid Brown, Philip J. Laperrière, David Leprince, Dominique de Cristofaro, Tiziana Prince, Kelly L. Putker, Marrit del Peso, Luis Camenisch, Gieri Wenger, Roland H. Mikula, Michal Rozendaal, Marieke Mader, Sylvie Ostrowski, Jerzy Rhodes, Simon J. van Rechem, Capucine Boulay, Gaylor Olechnowicz, Sam W. Z. Breslin, Mary B. Lan, Michael S. Nanan, Kyster K. Wegner, Michael Hou, Juan Mullen, Rachel D. Colvin, Stephanie C. Noy, Peter J. Webb, Carol F. Witek, Matthew E. Ferrell, Scott Daniel, Juliet M. Park, Jason Waldman, Scott A. Peet, Daniel J. Taggart, Michael Jayaraman, Padma-Sheela Karrich, Julien J. Blom, Bianca Vesuna, Farhad O'Geen, Henriette Sun, Yunfu Gronostajski, Richard M. Woodcroft, Mark W. Hough, Margaret R. Chen, Edwin Europe-Finner, G. Nicholas Karolczak-Bayatti, Magdalena Bailey, Jarrod Hankinson, Oliver Raman, Venu LeBrun, David P. Biswal, Shyam Harvey, Christopher J. DeBruyne, Jason P. Hogenesch, John B. Hevner, Robert F. Héligon, Christophe 2012

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TET-Catalyzed 5-Carboxylcytosine Promotes CTCF Binding to Suboptimal Sequences Genome-wide

Kyster K. Nanan ; David M. Sturgill ; Maria F. Prigge ; Morgan Thenoz ; Allissa A. Dillman ; Mariana D. Mandler ; Shalini Oberdoerffer

iScience, 01 September 2019, Vol.19, pp.326-339 [Peer Reviewed Journal]

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