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1
SHRiMP: Accurate Mapping of Short Color-space Reads
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SHRiMP: Accurate Mapping of Short Color-space Reads

Rumble, Stephen M ; Lacroute, Phil ; Dalca, Adrian V ; Fiume, Marc ; Sidow, Arend ; Brudno, Michael Wasserman, Wyeth W

PLoS computational biology, 2009-05-22, Vol.5 (5), p.e1000386-e1000386 [Peer Reviewed Journal]

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2
Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression
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Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression

Sanchez, Alvaro ; Garcia, Hernan G ; Jones, Daniel ; Phillips, Rob ; Kondev, Jané Wasserman, Wyeth W

PLoS computational biology, 2011-03-03, Vol.7 (3), p.e1001100-e1001100 [Peer Reviewed Journal]

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3
Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19
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Article
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Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19

Di Stefano, Marco ; Rosa, Angelo ; Belcastro, Vincenzo ; di Bernardo, Diego ; Micheletti, Cristian Wasserman, Wyeth W

PLoS computational biology, 2013, Vol.9 (3), p.e1003019-e1003019 [Peer Reviewed Journal]

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4
Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP
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Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP

Davydov, Eugene V ; Goode, David L ; Sirota, Marina ; Cooper, Gregory M ; Sidow, Arend ; Batzoglou, Serafim Wasserman, Wyeth W

PLoS computational biology, 2010-12-02, Vol.6 (12), p.e1001025-e1001025

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5
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

Waszak, Sebastian M ; Hasin, Yehudit ; Zichner, Thomas ; Olender, Tsviya ; Keydar, Ifat ; Khen, Miriam ; Stütz, Adrian M ; Schlattl, Andreas ; Lancet, Doron ; Korbel, Jan O Wasserman, Wyeth W

PLoS computational biology, 2010-11-11, Vol.6 (11), p.e1000988-e1000988 [Peer Reviewed Journal]

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6
Associating Genes and Protein Complexes with Disease via Network Propagation
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Associating Genes and Protein Complexes with Disease via Network Propagation

Vanunu, Oron ; Magger, Oded ; Ruppin, Eytan ; Shlomi, Tomer ; Sharan, Roded Wasserman, Wyeth W

PLoS computational biology, 2010-01-15, Vol.6 (1), p.e1000641-e1000641

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7
Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations
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Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations

Chapal-Ilani, Noa ; Maruvka, Yosef E ; Spiro, Adam ; Reizel, Yitzhak ; Adar, Rivka ; Shlush, Liran I ; Shapiro, Ehud Wasserman, Wyeth W

PLoS computational biology, 2013-11-14, Vol.9 (11), p.e1003297-e1003297 [Peer Reviewed Journal]

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8
Regulation of Clock-Controlled Genes in Mammals
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Regulation of Clock-Controlled Genes in Mammals

Bozek, Katarzyna ; Relógio, Angela ; Kielbasa, Szymon M ; Heine, Markus ; Dame, Christof ; Kramer, Achim ; Herzel, Hanspeter Wasserman, Wyeth W

PloS one, 2009-03-16, Vol.4 (3), p.e4882-e4882

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9
MetMap enables genome-scale Methyltyping for determining methylation states in populations
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MetMap enables genome-scale Methyltyping for determining methylation states in populations

Singer, Meromit ; Boffelli, Dario ; Dhahbi, Joseph ; Schönhuth, Alexander ; Schroth, Gary P ; Martin, David I K ; Pachter, Lior Wasserman, Wyeth W

PLoS computational biology, 2010-08-19, Vol.6 (8), p.e1000888-e1000888 [Peer Reviewed Journal]

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10
Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model
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Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model

Reuveni, Shlomi ; Meilijson, Isaac ; Kupiec, Martin ; Ruppin, Eytan ; Tuller, Tamir Wasserman, Wyeth W

PLoS computational biology, 2011-09-01, Vol.7 (9), p.e1002127-e1002127

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